View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5820-1 (Length: 235)
Name: Solexa-NF5820-1
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5820-1 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 27648775 - 27648548
Alignment:
| Q |
8 |
atatataggtatagatagattctactactatctcattagaaacttgtcttgatttgttattgcagtctattaccattcaatgtttggaagcacttcaata |
107 |
Q |
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| T |
27648775 |
atatataggtatagatagattctactactgtctcattagaaacttgtcttgatttgttattgcaatcaattaccattcaatgtttggaagcacttcagta |
27648676 |
T |
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| Q |
108 |
tttacataaccttggactaatacattgtgacttgaagccggagaatattttggttaaaaactacaaccgatgtgaggtgaaggtcattgatcttggaagt |
207 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
27648675 |
cttacataaccttggactaacacattgcgacttgaagccggagaatattttggttaaaagctacgaccgatgtgaggtgaaggtcattgatcttggaagt |
27648576 |
T |
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| Q |
208 |
agttgttttgagacagatcacctttgct |
235 |
Q |
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| T |
27648575 |
agttgttttgagacagatcacctttgct |
27648548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 27708927 - 27708733
Alignment:
| Q |
41 |
cattagaaacttgtcttgatttgttattgcagtctattaccattcaatgtttggaagcacttcaatatttacataaccttggactaatacattgtgactt |
140 |
Q |
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| T |
27708927 |
cattataaacttgtcttgatttgtttttgcagtcaattaccattcaatgtttggaagcacttcagtatttacataaccttggactaatacattgtgactt |
27708828 |
T |
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| Q |
141 |
gaagccggagaatattttggttaaaaactacaaccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgct |
235 |
Q |
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| T |
27708827 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgct |
27708733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 27728753 - 27728559
Alignment:
| Q |
41 |
cattagaaacttgtcttgatttgttattgcagtctattaccattcaatgtttggaagcacttcaatatttacataaccttggactaatacattgtgactt |
140 |
Q |
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||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27728753 |
cattataaacttgtcttgatttgtttttgcagtcaattaccattcaatgtttggaagcacttcagtatttacataaccttggactaatacattgtgactt |
27728654 |
T |
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| Q |
141 |
gaagccggagaatattttggttaaaaactacaaccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgct |
235 |
Q |
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| T |
27728653 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgct |
27728559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 27597799 - 27597646
Alignment:
| Q |
63 |
gttattgcagtctattaccattcaatgtttggaagcacttcaatatttacataaccttggactaatacattgtgacttgaagccggagaatattttggtt |
162 |
Q |
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|||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27597799 |
gttattgcagtcaattaccattcaatattaggaagcacttcagtatttacataaccttggactaatacattgtgacttgaagccggagaatattttggtt |
27597700 |
T |
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| Q |
163 |
aaaaactacaaccgatgtgaggtgaaggtcattgatcttggaagtagttgtttt |
216 |
Q |
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| T |
27597699 |
aaaagctacagccgatgtgaggtgaaggtcattgatcttggaagtagttgtttt |
27597646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 7332 - 7138
Alignment:
| Q |
41 |
cattagaaacttgtcttgatttgttattgcagtctattaccattcaatgtttggaagcacttcaatatttacataaccttggactaatacattgtgactt |
140 |
Q |
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||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7332 |
cattataaacttgtcttgatttgtttttgcagtcaattaccattcaatgtttggaagcacttcagtatttacataaccttggactaatacattgtgactt |
7233 |
T |
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| Q |
141 |
gaagccggagaatattttggttaaaaactacaaccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgct |
235 |
Q |
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| T |
7232 |
gaagccggagaatattttggttaaaagctacagccgatgtgaggtgaaggtcattgatcttggaagtagttgttttgagacagatcacctttgct |
7138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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