View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5820-12 (Length: 80)

Name: Solexa-NF5820-12
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5820-12
Solexa-NF5820-12
[»] chr7 (10 HSPs)
chr7 (1-80)||(31608294-31608373)
chr7 (1-80)||(31595091-31595170)
chr7 (1-80)||(31576034-31576113)
chr7 (1-80)||(31604700-31604779)
chr7 (1-80)||(31614575-31614654)
chr7 (1-80)||(31618304-31618383)
chr7 (1-80)||(31585444-31585523)
chr7 (1-74)||(31439138-31439211)
chr7 (1-80)||(31532433-31532512)
chr7 (1-80)||(31541056-31541135)
[»] chr1 (1 HSPs)
chr1 (1-80)||(52174426-52174505)
[»] scaffold0394 (1 HSPs)
scaffold0394 (1-77)||(1976-2052)
[»] chr4 (1 HSPs)
chr4 (1-77)||(15063482-15063558)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 8e-36; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-36
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31608294 - 31608373
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31608294 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaatgctctactaaatacttctgg 31608373  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31595091 - 31595170
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  31595091 atttcaagaatcaacataccataactgtatacatcagatttgtaagaaacaccaccaaatgctctgctaaatacttctgg 31595170  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31576034 - 31576113
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||| |||||||    
T  31576034 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctgg 31576113  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31604700 - 31604779
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||| |||||||    
T  31604700 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctgg 31604779  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31614575 - 31614654
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||||    
T  31614575 atttcaagaatcaacattccataactatatacatcagatttgtaagaaactccgccaaatgctctgctaaatacttctgg 31614654  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31618304 - 31618383
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||| ||||||    
T  31618304 atttcaagaatcaacatgccataactatatacatcagatctgtacgaaactccaccaaacgctctactaaatatttctgg 31618383  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31585444 - 31585523
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    ||||| ||||||| ||||||||||||||| |||||||| |||| |||||| ||||| || |||||| | |||| ||||||    
T  31585444 atttctagaatcagcatgccataactatacacatcagacttgtgagaaactccaccaaaggctctaatgaatatttctgg 31585523  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31439211 - 31439138
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatac 74  Q
    ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||| ||||| ||||||| ||| |||||    
T  31439211 atttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgactgaatac 31439138  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31532433 - 31532512
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    ||||| ||||| ||||| |||||||| ||||||||||| |||| |||||| |||||  ||| || |||||| ||||||||    
T  31532433 atttctagaattaacatcccataactgtatacatcagacttgtgagaaactccaccatatgttcgactaaacacttctgg 31532512  T

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Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31541056 - 31541135
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    ||||| ||||| ||||| |||||||||||||||||||| || | |||||| |||||  ||| ||  || |||||||||||    
T  31541056 atttctagaattaacataccataactatatacatcagacttatgagaaactccaccatatgttcggctgaatacttctgg 31541135  T

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Target: chr1 (Bit Score: 64; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 52174505 - 52174426
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttctgg 80  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  52174505 atttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctctactatatacttctgg 52174426  T

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Target: scaffold0394 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1976 - 2052
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttc 77  Q
    |||||||||||||||||||||||||| ||||||||||| ||  |||||||  |||| || |||| ||||||||||||    
T  1976 atttcaagaatcaacatgccataactgtatacatcagacttagaagaaactgcaccaaaagctcgactaaatacttc 2052  T

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Target: chr4 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 15063558 - 15063482
Alignment:
Q  1 atttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccacccaatgctctactaaatacttc 77  Q
    |||||||||||||||||||||||||| ||||||||||| ||  |||||||  |||| || |||| ||||||||||||    
T  15063558 atttcaagaatcaacatgccataactgtatacatcagacttagaagaaactgcaccaaaagctcgactaaatacttc 15063482  T

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