View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5820-4 (Length: 141)
Name: Solexa-NF5820-4
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5820-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 21491281 - 21491142
Alignment:
| Q |
2 |
agagagggtaaggtttccgattttgtggattctgatcagcgtggcctcgatacttcaagaaggggacgtaaggtttcatattatttcaccaacattccgg |
101 |
Q |
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| T |
21491281 |
agagagggtaaggtttccgatttcgtggattctgatcagcgtggcctcgatacttcaagaatgggaggtaaggtttcatattatttcaccaacattccga |
21491182 |
T |
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| Q |
102 |
aatgtcttcctatttttcttcaaagacaacagcttgaagt |
141 |
Q |
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| T |
21491181 |
aatgtcttcctatttttcttctgagacaacagcttgaagt |
21491142 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 13447516 - 13447566
Alignment:
| Q |
68 |
cgtaaggtttcatattatttcaccaacattccggaatgtcttcctattttt |
118 |
Q |
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| T |
13447516 |
cgtaaggtttcatattatttcaccaacatcccggaatgccttccaattttt |
13447566 |
T |
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