View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5820-7 (Length: 122)

Name: Solexa-NF5820-7
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5820-7
Solexa-NF5820-7
[»] chr6 (2 HSPs)
chr6 (1-119)||(25603329-25603447)
chr6 (1-119)||(25611667-25611785)
[»] chr7 (1 HSPs)
chr7 (1-105)||(15211530-15211634)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-105)||(192919-193024)
[»] chr3 (1 HSPs)
chr3 (1-111)||(30029906-30030016)
[»] chr1 (2 HSPs)
chr1 (5-119)||(20135245-20135360)
chr1 (45-114)||(22468684-22468754)
[»] chr8 (1 HSPs)
chr8 (2-114)||(23648616-23648729)
[»] chr5 (1 HSPs)
chr5 (1-100)||(18418656-18418754)
[»] chr4 (1 HSPs)
chr4 (49-119)||(22353891-22353962)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 1e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 25603329 - 25603447
Alignment:
Q  1 attgattatgatgtgatatgatagtgtatacatcacttgaagttttattgaataattgagatgtagtgaattataaatgatattgttatgtcatgatgtt 100  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25603329 attgattatgatgtgatatgatgttgtatacattacttgaagttttattgaataattgagatgtagtgaattataaatgatattgttatgtcatgatgtt 25603428  T
Q  101 gttgtaatctgcctttgct 119  Q
    |||||||||||||| ||||    
T  25603429 gttgtaatctgcctatgct 25603447  T

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Target: chr6; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 25611667 - 25611785
Alignment:
Q  1 attgattatgatgtgatatgatagtgtatacatcacttgaagttttattgaataattgagatgtagtgaattataaatgatattgttatgtcatgatgtt 100  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25611667 attgattatgatgtgatatgatgttgtatacattacttgaagttttattgaataattgagatgtagtgaattataaatgatattgttatgtcatgatgtt 25611766  T
Q  101 gttgtaatctgcctttgct 119  Q
    |||||||||||||| ||||    
T  25611767 gttgtaatctgcctatgct 25611785  T

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Target: chr7 (Bit Score: 85; Significance: 6e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 15211634 - 15211530
Alignment:
Q  1 attgattatgatgtgatatgatagtgtatacatcacttgaagttttattgaataattgagatgtagtgaattataaatgatattgttatgtcatgatgtt 100  Q
    ||||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15211634 attgattatgatgtgatataatgttgtatacatcgcttgaagttttattgaataattgagatgttgtgaattataaatgatattgttatgtcatgatgtt 15211535  T
Q  101 gttgt 105  Q
    |||||    
T  15211534 gttgt 15211530  T

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Target: scaffold0017 (Bit Score: 78; Significance: 9e-37; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 192919 - 193024
Alignment:
Q  1 attgattatgatgtgatatgatagtgta-tacatcacttgaagttttattgaataattgagatgtagtgaattataaatgatattgttatgtcatgatgt 99  Q
    |||||||||| |||||||| ||  |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  192919 attgattatggtgtgatataatgttgtaatacatcacttgaagttttattgaataattgagatgttgtgaattataaatgatattgttatgtcatgatgt 193018  T
Q  100 tgttgt 105  Q
    ||||||    
T  193019 tgttgt 193024  T

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Target: chr3 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 30030016 - 30029906
Alignment:
Q  1 attgattatgatgtgatatgatagtgtatacatcacttgaagttttattgaataattgagatgtagtgaattataaatgatattgttatgtcatgatgtt 100  Q
    ||||||||||||||||||| ||  ||| ||||| |||||||||||||||||||| || ||| || |||||||  |||||||||| |||||||||| ||||    
T  30030016 attgattatgatgtgatataatgttgtgtacattacttgaagttttattgaatatttaagacgttgtgaattgcaaatgatattcttatgtcatgctgtt 30029917  T
Q  101 gttgtaatctg 111  Q
    |||||||||||    
T  30029916 gttgtaatctg 30029906  T

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Target: chr1 (Bit Score: 52; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 20135360 - 20135245
Alignment:
Q  5 attatgatgtgatatgatagtgtatacatcacttgaagttttattgaataattgagatgtagt-gaattataaatgatattgttatgtcatgatgttgtt 103  Q
    |||||||| |||||| ||  ||||| ||| |||||||||||||||||||| || |||||| || |||||  | |||||||| ||||||||||||||||||    
T  20135360 attatgatatgatataatgttgtatgcattacttgaagttttattgaatacttaagatgttgttgaattgcacatgatattattatgtcatgatgttgtt 20135261  T
Q  104 gtaatctgcctttgct 119  Q
    ||||||||||| ||||    
T  20135260 gtaatctgcctatgct 20135245  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 22468684 - 22468754
Alignment:
Q  45 ttattgaataattgagatgtagt-gaattataaatgatattgttatgtcatgatgttgttgtaatctgcct 114  Q
    ||||||||||||| |||||| || |||||  || ||||||| | |||||||| ||||||||||||||||||    
T  22468684 ttattgaataattaagatgttgttgaattgcaattgatattatgatgtcatgctgttgttgtaatctgcct 22468754  T

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Target: chr8 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 23648729 - 23648616
Alignment:
Q  2 ttgattatgatgtgatatgatagtgtatacatcacttgaagttttattgaataattgagatgtagt-gaattataaatgatattgttatgtcatgatgtt 100  Q
    |||||||||||||||||| ||  ||| | ||| |||||||||||||||||||| || |||||| || | |||  |||||||||| |||||||||| ||||    
T  23648729 ttgattatgatgtgatataatgttgtgtgcattacttgaagttttattgaatatttaagatgttgttgtattgcaaatgatattattatgtcatgttgtt 23648630  T
Q  101 gttgtaatctgcct 114  Q
    ||||||||||||||    
T  23648629 gttgtaatctgcct 23648616  T

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Target: chr5 (Bit Score: 48; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 18418754 - 18418656
Alignment:
Q  1 attgattatgatgtgatatgatagtgtatacatcacttgaagttttattgaataattgagatgtagtgaattataaatgatattgttatgtcatgatgtt 100  Q
    ||||||||||||||||||| ||  ||| ||||| ||||||||||||||||||| ||| |||||| |||||||  |||||||||| |||||||||| ||||    
T  18418754 attgattatgatgtgatataatgttgtgtacattacttgaagttttattgaat-attaagatgttgtgaattgcaaatgatattattatgtcatgctgtt 18418656  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 22353962 - 22353891
Alignment:
Q  49 tgaataattgagatgtagt-gaattataaatgatattgttatgtcatgatgttgttgtaatctgcctttgct 119  Q
    ||||||||||||| || || ||||| ||| |||||||||||||||||| ||||| |  ||||||||| ||||    
T  22353962 tgaataattgagacgttgttgaattgtaattgatattgttatgtcatgttgttgctacaatctgcctatgct 22353891  T

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