View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5821-1 (Length: 217)
Name: Solexa-NF5821-1
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5821-1 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 9818087 - 9818228
Alignment:
| Q |
76 |
cgatgaacttgactatggtagcgatttgttgttgagtgaaaagcgaatggacaacagaaacttaaatgaaccttaagtttggattttgatgtgttcaaaa |
175 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9818087 |
cgatgaacttgactatggtatcgatttgttgttgagtgaaaagcgaatggacaacagaaacttaaataaaccttaagtttggattttgatgtgttcaaaa |
9818186 |
T |
|
| Q |
176 |
ctaaaatgaacctgaagttttgatttgttagcttcggtattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9818187 |
ctaaaatgaacctgaagttttgatttgttagcttcagtattt |
9818228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9772400 - 9772479
Alignment:
| Q |
1 |
gagacaaaggagtgttttctgataaatcccgcataatgagagttaggagtgctggtcgagagagatgaatcgctgcgatg |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
9772400 |
gagacaaaggagtgttttctgataaatcccgcataatgagagttaggagtgctggtccatcgagctgaatcgctgcgatg |
9772479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University