View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5821-12 (Length: 141)
Name: Solexa-NF5821-12
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5821-12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 21602346 - 21602479
Alignment:
| Q |
8 |
attcatacgttggcatgtatgcctaatgaaacgaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattccatggcatatgacc |
107 |
Q |
| |
|
||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21602346 |
attcatatgttgacatgtatgcataatgaagcgaaatccattgtatcaatcaacttccgttgctgagcaaaatagattattgattccatggcatatgacc |
21602445 |
T |
|
| Q |
108 |
gaataattgatatgattgcaaacctaaccctatg |
141 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| |
|
|
| T |
21602446 |
ggataattaatatgattgcaaacctaaccctatg |
21602479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 31999026 - 31999098
Alignment:
| Q |
40 |
gaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattccatggcatatgaccgaata |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| | ||||||| ||||| |||||||||||| |
|
|
| T |
31999026 |
gaaatccattgtatcaatcaacttccattgctgggcaaaatagctgattgatttgatggcgtatgaccgaata |
31999098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 6269415 - 6269467
Alignment:
| Q |
51 |
tatcaatcaacttccgatgctgagcaaaatagattattgattccatggcatat |
103 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||| |
|
|
| T |
6269415 |
tatcaatcaacttccaatgctgagaaaaatagtctattgattcaatgacatat |
6269467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 8934245 - 8934180
Alignment:
| Q |
40 |
gaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattccatggcatatga |
105 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
8934245 |
gaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatggcatatga |
8934180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 11917621 - 11917674
Alignment:
| Q |
40 |
gaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattc |
93 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
11917621 |
gaaatccattgtatcaatcgacttccgaacgtgagcaaaatagatgattgattc |
11917674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 2558891 - 2558809
Alignment:
| Q |
60 |
acttccgatgctgagcaaaatagattattgattccatggcatatgaccgaataattg-atatgattgcaaacctaaccctatg |
141 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| ||| ||||| |||||||| ||| |||| | |||||||| |||||||| |
|
|
| T |
2558891 |
acttccgatgttgagcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatg |
2558809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 442547 - 442616
Alignment:
| Q |
72 |
gagcaaaatagattattgattccatggcatatgaccgaataattg-atatgattgcaaacctaaccctat |
140 |
Q |
| |
|
||||||||||| | |||||||| ||| | |||||||||||| ||| |||||| || |||||||||||||| |
|
|
| T |
442547 |
gagcaaaatagttgattgattcgatgtcgtatgaccgaatagttgaatatgaatgtaaacctaaccctat |
442616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University