View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5821-14 (Length: 139)

Name: Solexa-NF5821-14
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5821-14
Solexa-NF5821-14
[»] chr1 (22 HSPs)
chr1 (2-139)||(10979436-10979573)
chr1 (2-138)||(11007841-11007977)
chr1 (2-138)||(11011003-11011139)
chr1 (2-138)||(10914702-10914838)
chr1 (2-138)||(10974359-10974495)
chr1 (3-138)||(10903539-10903674)
chr1 (2-138)||(11033294-11033430)
chr1 (2-136)||(11028468-11028602)
chr1 (2-138)||(11004883-11005019)
chr1 (17-87)||(9453700-9453770)
chr1 (17-82)||(8964681-8964746)
chr1 (2-75)||(8999839-8999912)
chr1 (6-87)||(9233924-9234005)
chr1 (17-87)||(9399796-9399866)
chr1 (17-84)||(9464285-9464352)
chr1 (17-84)||(9488717-9488784)
chr1 (17-87)||(9432713-9432783)
chr1 (17-82)||(8873944-8874009)
chr1 (17-138)||(9320015-9320136)
chr1 (17-138)||(9350332-9350453)
chr1 (6-87)||(9384389-9384470)
chr1 (17-81)||(9318166-9318230)
[»] chr5 (1 HSPs)
chr5 (47-87)||(40225245-40225285)
[»] chr4 (1 HSPs)
chr4 (12-57)||(27692614-27692659)
[»] chr2 (1 HSPs)
chr2 (47-87)||(7945893-7945933)
[»] chr6 (1 HSPs)
chr6 (12-87)||(30955230-30955305)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 9e-68; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 9e-68
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 10979573 - 10979436
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10979573 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtccta 10979474  T
Q  102 cagataaaagcattgtgtcattaactgcagcaagaggg 139  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  10979473 cagataaaagctttgtgtcattaactgcagcaagaggg 10979436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 11007977 - 11007841
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 101  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11007977 atgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtccta 11007878  T
Q  102 cagataaaagcattgtgtcattaactgcagcaagagg 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  11007877 cagataaaagcattgtgtcattaactgcagcaagagg 11007841  T

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Target: chr1; HSP #3
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 11011139 - 11011003
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  11011139 atgaaaattctacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttggactagctagactttgtccta 11011040  T
Q  102 cagataaaagcattgtgtcattaactgcagcaagagg 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  11011039 cagataaaagcattgtgtcattaactgcagcaagagg 11011003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 10914838 - 10914702
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | |||||    
T  10914838 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagccaggctttctccta 10914739  T
Q  102 cagataaaagcattgtgtcattaactgcagcaagagg 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  10914738 cagataaaagcattgtgtcattaactgcagcaagagg 10914702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 10974495 - 10974359
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 101  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  10974495 atgaaaattctacactttgatataaagcctcataccatccttcttgatgaatatttcaatccaaaagtttctgattttggacttgctagactttgtccta 10974396  T
Q  102 cagataaaagcattgtgtcattaactgcagcaagagg 138  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  10974395 cagataaaagcattgtgccattaactgctgcaagagg 10974359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 10903674 - 10903539
Alignment:
Q  3 tgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctac 102  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  10903674 tgaaaattctacactttgatataaagcctcataacattcttcttgatgaaagtttcaatccaaaagtttctgattttggacttgccagactttctcctac 10903575  T
Q  103 agataaaagcattgtgtcattaactgcagcaagagg 138  Q
    ||||||||||||||||||||||||||||||||||||    
T  10903574 agataaaagcattgtgtcattaactgcagcaagagg 10903539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 11033430 - 11033294
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 101  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||    
T  11033430 atgaaaattctacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaagtttctgattttggactagctagactttgtccta 11033331  T
Q  102 cagataaaagcattgtgtcattaactgcagcaagagg 138  Q
    ||||||||||||||||  |||||||||||||||||||    
T  11033330 cagataaaagcattgtcacattaactgcagcaagagg 11033294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 11028468 - 11028602
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||    
T  11028468 atgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctagactttgtccta 11028567  T
Q  102 cagataaaagcattgtgtcattaactgcagcaaga 136  Q
    ||| ||| |||||||||||||||||||||||||||    
T  11028568 caggtaatagcattgtgtcattaactgcagcaaga 11028602  T

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Target: chr1; HSP #9
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 11004883 - 11005019
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  | | |||||    
T  11004883 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggattagctagggtttctccta 11004982  T
Q  102 cagataaaagcattgtgtcattaactgcagcaagagg 138  Q
    |||| |||||||||||||| |||||||||||||||||    
T  11004983 cagacaaaagcattgtgtccttaactgcagcaagagg 11005019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 9453700 - 9453770
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 87  Q
    |||||||| |||||||| |||||||||||||| ||||||||||  || |||||||| |||||||| |||||    
T  9453700 tttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcagattttggtcttgc 9453770  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 8964746 - 8964681
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 82  Q
    |||||||| |||||||| ||||||||||||||||| |||||||  |||||||| ||||| ||||||    
T  8964746 tttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttgga 8964681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 8999912 - 8999839
Alignment:
Q  2 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctga 75  Q
    ||||| ||| |||| |||||||| |||||||| |||||||||||||||||||| ||||  |||||||| |||||    
T  8999912 atgaagattttacattttgatatcaagcctcacaacatccttcttgatgaaaacttcacaccaaaagtctctga 8999839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 9233924 - 9234005
Alignment:
Q  6 aaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 87  Q
    |||||||||| |||||||| ||||||||||| || ||||| || ||| |||||  |||||| ||||| ||||||||||||||    
T  9233924 aaattctacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaaaggtttcggattttggacttgc 9234005  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 9399866 - 9399796
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 87  Q
    |||||||| |||||||| |||||||||||||| ||||||||||  || |||||||| || ||||| |||||    
T  9399866 tttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttggtcttgc 9399796  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 9464352 - 9464285
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact 84  Q
    ||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||    
T  9464352 tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcggatttttgact 9464285  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 9488784 - 9488717
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact 84  Q
    ||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||    
T  9488784 tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcagattttagact 9488717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 9432713 - 9432783
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 87  Q
    |||||||| |||||||| ||||||||||| || ||||||||||  || |||||||| || ||||| |||||    
T  9432713 tttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttggtcttgc 9432783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 8873944 - 8874009
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 82  Q
    |||||||| |||||||| ||||||||||||||||| || || | ||| ||||| ||||| ||||||    
T  8873944 tttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttgga 8874009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 9320136 - 9320015
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 116  Q
    |||||||| ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| |||||||  || | |||||  || |  |||||||    
T  9320136 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg 9320037  T
Q  117 tgtcattaactgcagcaagagg 138  Q
    |  | |||||||||||||||||    
T  9320036 tcactttaactgcagcaagagg 9320015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 9350453 - 9350332
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg 116  Q
    |||||||| ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| |||||||  || | |||||  || |  |||||||    
T  9350453 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg 9350354  T
Q  117 tgtcattaactgcagcaagagg 138  Q
    |  | |||||||||||||||||    
T  9350353 tcactttaactgcagcaagagg 9350332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 9384470 - 9384389
Alignment:
Q  6 aaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 87  Q
    |||||||||| |||||||| ||||||||||| || ||||| || ||| | ||   |||||| ||||| ||||||||||||||    
T  9384470 aaattctacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgc 9384389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 9318166 - 9318230
Alignment:
Q  17 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgg 81  Q
    |||||||| ||||| |||||||||||||||||||| || || | ||| |||||||| || |||||    
T  9318166 tttgatatcaagccccataacatccttcttgatgagaactttattcccaaagtttcagactttgg 9318230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 40225285 - 40225245
Alignment:
Q  47 gatgaaaatttcaatccaaaagtttctgattttggacttgc 87  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  40225285 gatgaaaatttcaatccaaaactctctgattttggacttgc 40225245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 27692659 - 27692614
Alignment:
Q  12 tacactttgatataaagcctcataacatccttcttgatgaaaattt 57  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||    
T  27692659 tacactttgatataaaacctcataacattcttcttgacgagaattt 27692614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 7945893 - 7945933
Alignment:
Q  47 gatgaaaatttcaatccaaaagtttctgattttggacttgc 87  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  7945893 gatgaaaatttcaatccaaagctttctgattttggtcttgc 7945933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 30955230 - 30955305
Alignment:
Q  12 tacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 87  Q
    |||| ||||||||||| || |||||||| ||| | |||||||||||   ||||||  |||| ||||||||||||||    
T  30955230 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgc 30955305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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