View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5821-18 (Length: 129)
Name: Solexa-NF5821-18
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5821-18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 54033887 - 54034006
Alignment:
| Q |
10 |
taggtgataagagacacaacaattgttgactggctcaacaagaagatgttctcaagtcttttatctcgcctacttgaaggggatgctcagagttccttca |
109 |
Q |
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| T |
54033887 |
taggtgataagagacacaacaattgttgactggctcaacaagaagatgttctcaagtcttttatctcgcctacttgaaggggatgctcagagttccttca |
54033986 |
T |
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| Q |
110 |
taaggataggacaatatgat |
129 |
Q |
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| T |
54033987 |
taaggatgggacaatatgat |
54034006 |
T |
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