View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5821-20 (Length: 127)

Name: Solexa-NF5821-20
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5821-20
Solexa-NF5821-20
[»] chr6 (5 HSPs)
chr6 (8-127)||(2880344-2880463)
chr6 (8-127)||(2867885-2868004)
chr6 (8-119)||(35024100-35024213)
chr6 (8-89)||(28872126-28872207)
chr6 (8-89)||(33354444-33354525)
[»] chr4 (9 HSPs)
chr4 (8-122)||(16420607-16420721)
chr4 (8-127)||(53437380-53437499)
chr4 (8-127)||(53438813-53438932)
chr4 (8-127)||(55584688-55584807)
chr4 (8-112)||(46670878-46670982)
chr4 (24-112)||(42515167-42515255)
chr4 (8-89)||(6673147-6673228)
chr4 (8-89)||(9341619-9341700)
chr4 (8-89)||(9352720-9352801)
[»] chr5 (2 HSPs)
chr5 (8-122)||(41586321-41586435)
chr5 (8-89)||(32484129-32484210)
[»] chr3 (5 HSPs)
chr3 (8-127)||(21222005-21222124)
chr3 (11-122)||(11773226-11773338)
chr3 (8-89)||(12678505-12678586)
chr3 (11-127)||(27088294-27088412)
chr3 (21-89)||(560124-560192)
[»] scaffold0144 (1 HSPs)
scaffold0144 (9-127)||(39763-39881)
[»] chr7 (6 HSPs)
chr7 (8-122)||(9953648-9953763)
chr7 (8-122)||(23410043-23410159)
chr7 (11-112)||(23688328-23688429)
chr7 (8-89)||(30759032-30759113)
chr7 (11-127)||(7747834-7747951)
chr7 (8-89)||(25138053-25138133)
[»] chr2 (4 HSPs)
chr2 (8-122)||(44679466-44679582)
chr2 (8-122)||(41363413-41363529)
chr2 (8-112)||(28634191-28634295)
chr2 (8-89)||(11925336-11925417)
[»] scaffold0434 (1 HSPs)
scaffold0434 (8-122)||(11531-11646)
[»] scaffold0007 (1 HSPs)
scaffold0007 (27-127)||(276006-276107)
[»] scaffold0210 (1 HSPs)
scaffold0210 (8-89)||(22955-23036)
[»] scaffold0049 (1 HSPs)
scaffold0049 (8-89)||(38244-38325)
[»] chr1 (1 HSPs)
chr1 (8-89)||(36216159-36216240)
[»] chr8 (3 HSPs)
chr8 (8-89)||(10333301-10333382)
chr8 (8-89)||(9330739-9330820)
chr8 (11-103)||(40455308-40455400)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 8e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 2880463 - 2880344
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2880463 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 2880364  T
Q  108 gaactataataataagattg 127  Q
    ||||||||||||||||||||    
T  2880363 gaactataataataagattg 2880344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 2868004 - 2867885
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2868004 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgtaataatgaaaattaagtaaagtaaaattggatt 2867905  T
Q  108 gaactataataataagattg 127  Q
    ||||||||||||||||||||    
T  2867904 gaactataataataagattg 2867885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 35024213 - 35024100
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttg--tgtgattgcaataatgaaaattaagtaaagtaaaattgga 105  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  35024213 cgcgttatactgtcgaataatatttgtgatttaattgaacaaaaagttactgaatttgtgtgtgattgcaataatgaaagttaagtaaagtaaaattgga 35024114  T
Q  106 ttgaactataataa 119  Q
    ||||||||||||||    
T  35024113 ttgaactataataa 35024100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 28872207 - 28872126
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  28872207 cgcgttatactgtcgaatgatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 28872126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 33354525 - 33354444
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||   || ||| |||| ||||||||| |||||||    
T  33354525 cgcgttatactgtcaaataatatttgttacttaattgaacaaaaaggtacgagatatgtttgatagcaataatgtaaattaa 33354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 2e-56; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 16420721 - 16420607
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16420721 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggaat 16420622  T
Q  108 gaactataataataa 122  Q
    |||||||||||||||    
T  16420621 gaactataataataa 16420607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 53437499 - 53437380
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53437499 cgcgttatactgtcgaatagtatttataacttaattgaacaaaaaggtactgaatttgtgtgattacaataatgaaaattaagtaaagtaaaattggatt 53437400  T
Q  108 gaactataataataagattg 127  Q
    ||||||||||||||||||||    
T  53437399 gaactataataataagattg 53437380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 53438932 - 53438813
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53438932 cgcgttatactgtcgaatagtatttataacttaattgaacaaaaaggtactgaatttgtgtgattacaataatgaaaattaagtaaagtaaaattggatt 53438833  T
Q  108 gaactataataataagattg 127  Q
    ||||||||||||||||||||    
T  53438832 gaactataataataagattg 53438813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 55584688 - 55584807
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  55584688 cgcgttatactgtcgaatagtatttataacttaattgaacaaaaaggtactgaatttgtttgattgcgataatgaaaattaagtaaagtaaaattggatt 55584787  T
Q  108 gaactataataataagattg 127  Q
    ||||||||||||||||||||    
T  55584788 gaactataataataagattg 55584807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 46670878 - 46670982
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| ||    
T  46670878 cgcgttatactgtcgaataatatttataacttaattgaacaaaaaggtactgaatttggttgattgcaataatgaaaattaagcaaagtaaaattggttt 46670977  T
Q  108 gaact 112  Q
    |||||    
T  46670978 gaact 46670982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 42515167 - 42515255
Alignment:
Q  24 ataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggattgaact 112  Q
    ||||||||||||||||||||||||||||||||| || | |||| |||| |||||||||||||||||| ||| ||||||||| |||||||    
T  42515167 ataatatttgtgacttaattgaacaaaaaggtaatggacttgtttgatagcaataatgaaaattaagaaaaataaaattggtttgaact 42515255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 6673147 - 6673228
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  6673147 cgcgttatactgtcgaatgatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 6673228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 9341619 - 9341700
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  9341619 cgcgttatactgtcgaaaaatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 9341700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 9352720 - 9352801
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  9352720 cgcgttatactgtcgaaaaatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 9352801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 4e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 41586435 - 41586321
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41586435 cgcgttatactgtcgaataatatttttgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaattaaagtaaaattggatt 41586336  T
Q  108 gaactataataataa 122  Q
    |||||||||||||||    
T  41586335 gaactataataataa 41586321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 32484210 - 32484129
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    ||||||||| ||||||||| ||||| | |||||| | |||||||||||| || |||||| |||| | ||||||||| |||||    
T  32484210 cgcgttataatgtcgaatactatttataacttaactaaacaaaaaggtattggatttgtttgataggaataatgaacattaa 32484129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 7e-50; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 21222124 - 21222005
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  21222124 cgcgttatactgtcgaataatacttgttacttaattgaacaaaaaggtaccagatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 21222025  T
Q  108 gaactataataataagattg 127  Q
    ||||||||||||||||||||    
T  21222024 gaactataataataagattg 21222005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 11773226 - 11773338
Alignment:
Q  11 gttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggattgaa 110  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| ||||||| |||||    
T  11773226 gttatactgtcgaatagtatttataacttaattgaacaaaaaggtactgaatttgttcgattgcaataatgaaaattaagcaaagt-aaattggtttgaa 11773324  T
Q  111 c--tataataataa 122  Q
    |  |||||||||||    
T  11773325 ctttataataataa 11773338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 12678505 - 12678586
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||   ||||||  ||| ||||||||| |||||||    
T  12678505 cgcgttatactgtcgaataatacttgttacttaattgaacaaaaaggtacgagatttgttcgatagcaataatgtaaattaa 12678586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 27088294 - 27088412
Alignment:
Q  11 gttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggattgaa 110  Q
    |||||||| | ||||| | ||| | ||||||||||||||||  ||||| ||||| | |||| |||||||||||||||| || |||||||||||| || ||    
T  27088294 gttatactattgaatagtgtttataacttaattgaacaaaatagtactaaatttttttgatagcaataatgaaaattatgtgaagtaaaattggtttaaa 27088393  T
Q  111 ct--ataataataagattg 127  Q
    ||  |||||||||| ||||    
T  27088394 cttgataataataaaattg 27088412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 560192 - 560124
Alignment:
Q  21 cgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    ||||| ||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  560192 cgaatgatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 560124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 39763 - 39881
Alignment:
Q  9 gcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggattg 108  Q
    |||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39763 gcgttatactctcgaatagtatttataacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtataattggattg 39862  T
Q  109 aactataataataagattg 127  Q
    |||||||||||||||||||    
T  39863 aactataataataagattg 39881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 9953648 - 9953763
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    |||||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||    
T  9953648 cgcgttatactgtcgaatgatatttataacttaattgaacaaaaaggtactcaatttgtttgattgcaataatgaaaattaagtaaagt-aaattggttt 9953746  T
Q  108 gaac--tataataataa 122  Q
    ||||  |||||||||||    
T  9953747 gaactttataataataa 9953763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 23410159 - 23410043
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||| ||    
T  23410159 cgcgttatactgtcgaatagtatttataacttaattgaacaaaaaggtcctgaatttgtttgattgcaataatgaaaattaagcaaagtaaatttggttt 23410060  T
Q  108 gaac--tataataataa 122  Q
    ||||  |||||||||||    
T  23410059 gaactttataataataa 23410043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 23688328 - 23688429
Alignment:
Q  11 gttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggattgaa 110  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||    
T  23688328 gttatactgtcgaataatacttgctacttaattgaacaaaaaggtactgaatttgtttgattgcaataatgaaaattaagcaaagtaaatttggtttgaa 23688427  T
Q  111 ct 112  Q
    ||    
T  23688428 ct 23688429  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 30759113 - 30759032
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  30759113 cgcgttatactgtcgaataatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 30759032  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 7747951 - 7747834
Alignment:
Q  11 gttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggattgaa 110  Q
    ||||||||||||||||||| | || |||||| |||||||||||||||   |||||| |||| |||||||||||||||||| |||  |||||||| |||||    
T  7747951 gttatactgtcgaataatactcgttacttaagtgaacaaaaaggtacgagatttgtttgatagcaataatgaaaattaagcaaa-aaaaattggtttgaa 7747853  T
Q  111 c--tataataataagattg 127  Q
    |  ||||||||||| ||||    
T  7747852 ctttataataataaaattg 7747834  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 25138133 - 25138053
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||   |||||| |||| ||||||||| |||||||    
T  25138133 cgcgttatactgtcgaataatatttataacttaattgaac-aaaaggtacgagatttgtttgatagcaataatgtaaattaa 25138053  T

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Target: chr2 (Bit Score: 74; Significance: 2e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 44679466 - 44679582
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |||| ||    
T  44679466 cgcgttatactgtcgaatagtatttataacttaattgaacaaaaatgtgctgaatttgtttgattgcaataatgaaaattaagtaaagtaaatttggttt 44679565  T
Q  108 gaac--tataataataa 122  Q
    ||||  |||||||||||    
T  44679566 gaactttataataataa 44679582  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 41363529 - 41363413
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||||||||||||| ||||| | ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||| ||    
T  41363529 cgcgttatactgtcgaatattatttataacttaatcgaacaaaaaggtacttaatttgtttgattgcaataatgaaaattaagcaaagtaaatttggttt 41363430  T
Q  108 gaac--tataataataa 122  Q
    ||||  |||||||||||    
T  41363429 gaactttataataataa 41363413  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 28634295 - 28634191
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||  ||| ||    
T  28634295 cgcgttatattgtcgaataatatttataacttaattgaacaaaaaggtactgaatttgtttgattgcaataatgaaaattaagcaaaataaatctggttt 28634196  T
Q  108 gaact 112  Q
    |||||    
T  28634195 gaact 28634191  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 11925336 - 11925417
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  11925336 cgcgttatactgtcgaataatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 11925417  T

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Target: scaffold0434 (Bit Score: 66; Significance: 1e-29; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 11646 - 11531
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggatt 107  Q
    |||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||| ||    
T  11646 cgcgttataccgtcgaatagtatttataacttaattgaacaaaaaggtactgaatttgtttgattgcaataatgaaaattaagcaaa-ttaaattggttt 11548  T
Q  108 gaac--tataataataa 122  Q
    ||||  |||||||||||    
T  11547 gaactttataataataa 11531  T

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Target: scaffold0007 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 276107 - 276006
Alignment:
Q  27 atatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattggattgaac--tataataataaga 124  Q
    |||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||  ||||||||||| |    
T  276107 atatttataacttaattgaacaaaaaggtaccgaatttgtttgattgcaataatgaaaattaagcaaagt-aaattggtttgaactttataataataaaa 276009  T
Q  125 ttg 127  Q
    |||    
T  276008 ttg 276006  T

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Target: scaffold0210 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 22955 - 23036
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  22955 cgcgttatactgtcgaataatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 23036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 38244 - 38325
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  38244 cgcgttatactgtcgaataatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 38325  T

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Target: chr1 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 36216240 - 36216159
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  36216240 cgcgttatactgtcgaataatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 36216159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 10333382 - 10333301
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  10333382 cgcgttatactgtcgaaaaatacttgttacttaattgaacaaaaaggtacgagatttgtttgatagcaataatgtaaattaa 10333301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 9330820 - 9330739
Alignment:
Q  8 cgcgttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaa 89  Q
    ||||||||||||| |||| ||| ||| |||||||||||||||||||||||   |||||| |||| ||||||||| |||||||    
T  9330820 cgcgttatactgttgaatgatacttgagacttaattgaacaaaaaggtacaagatttgtttgatagcaataatgtaaattaa 9330739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 40455400 - 40455308
Alignment:
Q  11 gttatactgtcgaataatatttgtgacttaattgaacaaaaaggtactgaatttgtgtgattgcaataatgaaaattaagtaaagtaaaattg 103  Q
    |||||||| || |||||||||| |||||||| | |||||||||||| ||  ||||| ||||  ||||||||||||||||| ||  ||||||||    
T  40455400 gttatactatcaaataatatttatgacttaactaaacaaaaaggtattgggtttgtttgataacaataatgaaaattaagcaatttaaaattg 40455308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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