View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5821-22 (Length: 121)
Name: Solexa-NF5821-22
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5821-22 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 7e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 38453609 - 38453496
Alignment:
| Q |
8 |
attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtga |
107 |
Q |
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| T |
38453609 |
attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtga |
38453510 |
T |
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| Q |
108 |
tagagaaaggactg |
121 |
Q |
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| T |
38453509 |
tagagaaaagactg |
38453496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 39848865 - 39848939
Alignment:
| Q |
8 |
attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggt |
82 |
Q |
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| T |
39848865 |
attggtaacttcaggagtaaacttctccatgacaatggaaaatacacacactcaaatggaacaatatacgagggt |
39848939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 38633153 - 38633216
Alignment:
| Q |
8 |
attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaa |
71 |
Q |
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| T |
38633153 |
attggtaacttcaggagtaaacttctccatgtcaatggaaaatacacatgctcagatggaacaa |
38633216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 9e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 44474731 - 44474844
Alignment:
| Q |
8 |
attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtga |
107 |
Q |
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| T |
44474731 |
attggtaacttcaggagtaaacttctttatgacaacggaacatacacatgttcaaatgaaacaatgtacaagggttgcatatgctcaaatgaaaaagtga |
44474830 |
T |
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| Q |
108 |
tagagaaaggactg |
121 |
Q |
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| T |
44474831 |
tagagaaaggactg |
44474844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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