View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5821-25 (Length: 111)

Name: Solexa-NF5821-25
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5821-25
Solexa-NF5821-25
[»] chr1 (16 HSPs)
chr1 (8-111)||(10979329-10979432)
chr1 (8-111)||(11010895-11010998)
chr1 (8-111)||(11005024-11005127)
chr1 (8-111)||(10901594-10901697)
chr1 (12-111)||(11033190-11033289)
chr1 (8-111)||(10974251-10974354)
chr1 (12-111)||(11007737-11007836)
chr1 (17-111)||(11028609-11028703)
chr1 (11-108)||(10914597-10914694)
chr1 (8-95)||(10903434-10903521)
chr1 (9-111)||(9318292-9318394)
chr1 (11-60)||(9082592-9082641)
chr1 (13-105)||(9384235-9384327)
chr1 (9-111)||(9319908-9320010)
chr1 (13-57)||(9096865-9096909)
chr1 (13-105)||(9234067-9234159)
[»] chr3 (1 HSPs)
chr3 (9-65)||(9159598-9159654)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 6e-50; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 6e-50
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 10979329 - 10979432
Alignment:
Q  8 ctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10979329 ctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccatgtatc 10979428  T
Q  108 caat 111  Q
    ||||    
T  10979429 caat 10979432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 11010895 - 11010998
Alignment:
Q  8 ctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  11010895 ctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccatatatc 11010994  T
Q  108 caat 111  Q
    ||||    
T  11010995 caat 11010998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 11005127 - 11005024
Alignment:
Q  8 ctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatc 107  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||  ||||||||||    
T  11005127 ctacttgccatctccatcaacaacatcccaaagctatagacatcagctttgtgagatattgtgccgacatttctgtagaatagttcaggggccatgtatc 11005028  T
Q  108 caat 111  Q
    ||||    
T  11005027 caat 11005024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 10901594 - 10901697
Alignment:
Q  8 ctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatc 107  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||  ||||||||||    
T  10901594 ctacttgccatctccatcaacaacattccaaaactatagacatcagctttgtgagatattgtgccgacatttctgtagaataattcaggggccatgtatc 10901693  T
Q  108 caat 111  Q
    ||||    
T  10901694 caat 10901697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 11033190 - 11033289
Alignment:
Q  12 ttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatccaat 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||| ||||||||    
T  11033190 ttgccatctccatcaacaacatcccaaaactataaacatcagctttgtaagatattgtgccgacatttcggtagaatagttcaggggccatatatccaat 11033289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 10974251 - 10974354
Alignment:
Q  8 ctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatc 107  Q
    ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||  ||||||||||    
T  10974251 ctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcaggggccatgtatc 10974350  T
Q  108 caat 111  Q
    ||||    
T  10974351 caat 10974354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 11007737 - 11007836
Alignment:
Q  12 ttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatccaat 111  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||  ||||||||||||||    
T  11007737 ttgccatctccattaacaacatcccaaaactataaacatcagctttgtaagatatcgtgccgacatttcggtagaatagttcaggggccatgtatccaat 11007836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 11028703 - 11028609
Alignment:
Q  17 atctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatccaat 111  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  11028703 atctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaacatttctatagaatagttcaggggccatgtatccaat 11028609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 10914597 - 10914694
Alignment:
Q  11 cttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatcc 108  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||  ||||| |||||    
T  10914597 cttgccatctccattaacaacatcccaaagctatatacatcagctttgtgagatattgtgccgacatttctatagaataattcaggggccatatatcc 10914694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10903434 - 10903521
Alignment:
Q  8 ctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag 95  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||  | ||||||||||||||||| |||||||    
T  10903434 ctacttgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatatcattccaacatttctgtagaaaagttcag 10903521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 9318394 - 9318292
Alignment:
Q  9 tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatcc 108  Q
    |||||||||| |||||||| | ||| ||||| ||||||||||| || ||||| |||| |   |||| |||| ||||||| | ||||| ||||||||||||    
T  9318394 tacttgccatttccatcaaaagcattccaaagctatatacatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatcc 9318295  T
Q  109 aat 111  Q
    |||    
T  9318294 aat 9318292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 9082641 - 9082592
Alignment:
Q  11 cttgccatctccatcaacaacatcccaaaactatatacatcagctttgta 60  Q
    ||||||||||||||||| | ||||||||||||||| |||||||| |||||    
T  9082641 cttgccatctccatcaaaagcatcccaaaactataaacatcagccttgta 9082592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 9384235 - 9384327
Alignment:
Q  13 tgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgta 105  Q
    |||||| |||||||| | ||| ||||| |||||||||||||| |||||||| | |   |||| |||| ||||||| ||||||| |||||||||    
T  9384235 tgccatttccatcaaaagcattccaaagctatatacatcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccatgta 9384327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 9319908 - 9320010
Alignment:
Q  9 tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgtatcc 108  Q
    |||||||||| |||||||| | ||| || || |||||||||||||| ||||| |||| |   |||| |||| ||||||| | ||||| |||||| |||||    
T  9319908 tacttgccatttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatcc 9320007  T
Q  109 aat 111  Q
    |||    
T  9320008 aat 9320010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 9096909 - 9096865
Alignment:
Q  13 tgccatctccatcaacaacatcccaaaactatatacatcagcttt 57  Q
    ||||||||||||||| | ||||||||| ||||| |||||||||||    
T  9096909 tgccatctccatcaaaagcatcccaaagctataaacatcagcttt 9096865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 9234159 - 9234067
Alignment:
Q  13 tgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagcagccatgta 105  Q
    |||||| |||||||| | ||| |||||||| ||||||||||||||||| || | |   |||| |||| ||||||| | ||||| |||||||||    
T  9234159 tgccatttccatcaaaagcattccaaaactgtatacatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccatgta 9234067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 9159598 - 9159654
Alignment:
Q  9 tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagata 65  Q
    |||||||||| |||||||| | ||| ||||||||||| |||||||| ||||| ||||    
T  9159598 tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgata 9159654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University