View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5821-27 (Length: 70)

Name: Solexa-NF5821-27
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5821-27
Solexa-NF5821-27
[»] chr5 (13 HSPs)
chr5 (7-70)||(37704114-37704177)
chr5 (7-64)||(37430209-37430266)
chr5 (7-66)||(37391606-37391665)
chr5 (7-66)||(37399472-37399531)
chr5 (7-66)||(37437151-37437210)
chr5 (7-66)||(37534556-37534615)
chr5 (7-66)||(37595780-37595839)
chr5 (7-66)||(37641328-37641387)
chr5 (7-66)||(37713074-37713133)
chr5 (7-66)||(37825345-37825404)
chr5 (7-65)||(37698244-37698302)
chr5 (28-68)||(37411981-37412021)
chr5 (28-63)||(37381001-37381036)
[»] chr3 (1 HSPs)
chr3 (7-66)||(14554482-14554541)
[»] chr4 (1 HSPs)
chr4 (11-65)||(16841525-16841579)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 1e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 37704177 - 37704114
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704177 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgt 37704114  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-23
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 37430266 - 37430209
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgaca 64  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37430266 acagaatcttggaaaaccggcacagattgctgcgagtgggatggtgtcacgtgcgaca 37430209  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 37391606 - 37391665
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    |||||||||||||||| | | ||| |||||||| ||||||||||||||||||||||||||    
T  37391606 acagaatcttggaaaaacagtacaaattgttgcaagtgggatggtgtcacgtgcgacacc 37391665  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 37399472 - 37399531
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||||||    
T  37399472 acagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacacc 37399531  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 37437210 - 37437151
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||||||    
T  37437210 acagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacacc 37437151  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 37534615 - 37534556
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||||||    
T  37534615 acagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacacc 37534556  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 37595839 - 37595780
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||||||    
T  37595839 acagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacacc 37595780  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 37641387 - 37641328
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    |||||||||||||||| |   ||||||||||| |||||||||||||||||||||||||||    
T  37641387 acagaatcttggaaaaacaatacagattgttgtgagtgggatggtgtcacgtgcgacacc 37641328  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 37713133 - 37713074
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||||||    
T  37713133 acagaatcttggcaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacacc 37713074  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 37825404 - 37825345
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    |||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||||||    
T  37825404 acagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacacc 37825345  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 37698302 - 37698244
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacac 65  Q
    |||||||||||||||| |   |||||||||||| ||||||||||||||||||| |||||    
T  37698302 acagaatcttggaaaaacaatacagattgttgcaagtgggatggtgtcacgtgtgacac 37698244  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 37411981 - 37412021
Alignment:
Q  28 acagattgttgcgagtgggatggtgtcacgtgcgacaccgt 68  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  37411981 acagattgttgcgagtggtatggtgtcatgtgcgacaccgt 37412021  T

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Target: chr5; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 37381001 - 37381036
Alignment:
Q  28 acagattgttgcgagtgggatggtgtcacgtgcgac 63  Q
    ||||||||||| | ||||||||||||||||||||||    
T  37381001 acagattgttgtgggtgggatggtgtcacgtgcgac 37381036  T

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Target: chr3 (Bit Score: 44; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 14554541 - 14554482
Alignment:
Q  7 acagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacacc 66  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||    
T  14554541 acagaatcttggaaaaagagtacagattgttgcgagtgggatggtgtcacgtgcgacacc 14554482  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 16841525 - 16841579
Alignment:
Q  11 aatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacac 65  Q
    |||||||||||| ||| || ||||||||| ||||||||||||||||||| |||||    
T  16841525 aatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 16841579  T

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