View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5821-7 (Length: 147)
Name: Solexa-NF5821-7
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5821-7 |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 6e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 9818447 - 9818586
Alignment:
| Q |
8 |
atgaaatctaaagtagcaaagaatgcacacaattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacataatataattca |
107 |
Q |
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| T |
9818447 |
atgaaatctaaagtagcaaagaacgcacaaaattaaacacatattcattactaatcatcaaagttcgttgctagtaacactttaaacataatataattca |
9818546 |
T |
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| Q |
108 |
agtatcaaataagttgtagcctccaaggctcaaaataaca |
147 |
Q |
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| T |
9818547 |
agtagcaaataagttgtagcctccgaggctcaaaataaca |
9818586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 9824183 - 9824304
Alignment:
| Q |
24 |
caaagaatgcacacaattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacataatataattcaagtatcaaataagttg |
123 |
Q |
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| T |
9824183 |
caaagaatgcacaaaattaaaca--tattcattactaatcatcaaagttatttgctactaacactttaaacataatataattcaagtagcaaataagttg |
9824280 |
T |
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| Q |
124 |
tagcctccaaggctcaaaataaca |
147 |
Q |
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| T |
9824281 |
tagcctccatggctcaaagtaaca |
9824304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 9824341 - 9824372
Alignment:
| Q |
114 |
aaataagttgtagcctccaaggctcaaaataa |
145 |
Q |
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| T |
9824341 |
aaataagttatagcctccaaggctcaaaataa |
9824372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 6408370 - 6408244
Alignment:
| Q |
26 |
aagaatgcacacaattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacat-----aatataattcaagtatcaaataag |
120 |
Q |
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| T |
6408370 |
aagaatgcacagaattaaacacaaattcattactaatcatcaaagttcattgctattaatatttcaaacataatacaatataattcttgtagcaaataag |
6408271 |
T |
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| Q |
121 |
ttgtagcctccaaggctcaaaataaca |
147 |
Q |
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| T |
6408270 |
ttctagtctccaaagctcaacataaca |
6408244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 1000247 - 1000339
Alignment:
| Q |
46 |
acatattcattactaatcatcaaagttcattgctactaacattttaaacataatataattcaagtatcaaataagttgtagcctccaaggctcaaaataa |
145 |
Q |
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| T |
1000247 |
acatattcattaatactcatcaaaattcattgctactaatattttaaacataata------aag---caaataagttctagccaccaaggctcaaaataa |
1000337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 6411547 - 6411475
Alignment:
| Q |
38 |
aattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacataatataattcaagt |
110 |
Q |
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| T |
6411547 |
aattaaacacaaattctgtactgatcatcaaagttcattgctataaatatttcaaacataatataattcaagt |
6411475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 1000823 - 1000732
Alignment:
| Q |
50 |
attcattactaatcatcaaagttcattgctactaacattttaaacataatataattcaagtatcaaataagttgtagcctccaaggctcaaa |
141 |
Q |
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| T |
1000823 |
attcataaataatcatcaaagttcattgctaataatatttcaaacataatctaaagaaaaatgcaaataagttctagcctccaaggttcaaa |
1000732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 43545748 - 43545664
Alignment:
| Q |
42 |
aaacacatattcattactaatcatcaaagttcattgcta----ctaacattttaaacataatataattcaagtatcaaataagtt |
122 |
Q |
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| T |
43545748 |
aaacacatattcgttactaatcaacaaagttcattgcttgctcctaatatttcaaacataatataattcaagtagcaaataagtt |
43545664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 41503524 - 41503641
Alignment:
| Q |
26 |
aagaatgcacacaattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacataatataat-tcaagtatcaaataagttgt |
124 |
Q |
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| T |
41503524 |
aagaatgcacaaaataaaacacatattcataacaaataatcgaagttcattgctactaat-tttcaaacaaaatataaaataaactagcaaatatgtttt |
41503622 |
T |
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| Q |
125 |
agcctccaaggctcaaaat |
143 |
Q |
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| T |
41503623 |
tgcctccaaggctaaaaat |
41503641 |
T |
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