View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5822-2 (Length: 241)
Name: Solexa-NF5822-2
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5822-2 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 35927093 - 35926868
Alignment:
| Q |
8 |
ggaggaccagcagaatatcaacaaattcggaaggttgaataatcgcttacacgagctacatgatgagatcaaaatcgctaaggtaatcaatttttaattt |
107 |
Q |
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| T |
35927093 |
ggaggaccagcagaatatcaacaaattcggaaggttgaataatcgcttacacgagctacatgatgagatcaaaatcgctaaggtaatcaatttttaattt |
35926994 |
T |
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| Q |
108 |
caaattctgagttttgcgttaatgaaatttagggaaatcatgttccaatcgtattcaaaggttgtcgaatagaaatgggtccaaaatcaaagagaatccc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35926993 |
caaattctgagttttgcgttaatgaaatttagggaaatcatgttccaatcgtattcaaaggttgtcgaatagtaatgggtccaaaatcaaagagaatccc |
35926894 |
T |
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| Q |
208 |
tttatacttaatttatatcctttgct |
233 |
Q |
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| |||||||||||||||||||||||| |
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| T |
35926893 |
tatatacttaatttatatcctttgct |
35926868 |
T |
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