View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5822-36 (Length: 61)

Name: Solexa-NF5822-36
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5822-36
Solexa-NF5822-36
[»] chr8 (15 HSPs)
chr8 (7-60)||(32931298-32931351)
chr8 (10-60)||(21653218-21653268)
chr8 (7-60)||(18905748-18905801)
chr8 (7-60)||(36997058-36997111)
chr8 (11-60)||(3184066-3184115)
chr8 (11-60)||(31766893-31766942)
chr8 (12-60)||(23027669-23027717)
chr8 (11-60)||(23027991-23028040)
chr8 (13-58)||(40754338-40754383)
chr8 (28-60)||(20298696-20298728)
chr8 (28-60)||(21085328-21085360)
chr8 (12-60)||(22277416-22277464)
chr8 (10-56)||(21653700-21653745)
chr8 (17-60)||(34248277-34248320)
chr8 (26-60)||(45227328-45227362)
[»] chr7 (18 HSPs)
chr7 (7-60)||(257426-257479)
chr7 (7-60)||(41670760-41670813)
chr7 (7-60)||(43168052-43168105)
chr7 (7-60)||(1661350-1661403)
chr7 (11-60)||(1663767-1663816)
chr7 (7-60)||(40121777-40121830)
chr7 (7-60)||(40122085-40122138)
chr7 (7-60)||(7135402-7135455)
chr7 (7-60)||(30296521-30296574)
chr7 (11-60)||(28909924-28909973)
chr7 (11-59)||(29780352-29780400)
chr7 (7-56)||(41670480-41670529)
chr7 (25-60)||(21033986-21034021)
chr7 (17-60)||(37272188-37272231)
chr7 (24-58)||(8584999-8585033)
chr7 (24-60)||(33582386-33582422)
chr7 (25-60)||(3973053-3973088)
chr7 (17-59)||(12305224-12305266)
[»] chr6 (17 HSPs)
chr6 (7-60)||(19753763-19753816)
chr6 (7-60)||(1408903-1408956)
chr6 (7-60)||(10733597-10733650)
chr6 (7-60)||(21067216-21067269)
chr6 (11-60)||(24055272-24055321)
chr6 (12-60)||(30539127-30539175)
chr6 (10-60)||(10418500-10418550)
chr6 (7-60)||(1745001-1745054)
chr6 (11-60)||(8143910-8143959)
chr6 (7-60)||(21089007-21089060)
chr6 (7-56)||(28068577-28068626)
chr6 (7-59)||(21043940-21043992)
chr6 (7-59)||(22911333-22911385)
chr6 (7-60)||(19054385-19054438)
chr6 (7-59)||(22889727-22889779)
chr6 (11-60)||(12134646-12134695)
chr6 (25-60)||(1206040-1206075)
[»] chr5 (18 HSPs)
chr5 (7-60)||(13843589-13843642)
chr5 (7-61)||(27759966-27760020)
chr5 (9-60)||(12595264-12595315)
chr5 (7-60)||(13843905-13843958)
chr5 (7-60)||(27760283-27760336)
chr5 (7-55)||(20837706-20837754)
chr5 (11-60)||(37995797-37995846)
chr5 (7-55)||(20811351-20811399)
chr5 (9-60)||(17016254-17016303)
chr5 (7-60)||(1028252-1028304)
chr5 (11-60)||(28010279-28010328)
chr5 (27-60)||(30588224-30588257)
chr5 (16-60)||(28009965-28010009)
chr5 (13-56)||(24918060-24918103)
chr5 (9-56)||(24993968-24994015)
chr5 (13-60)||(38131659-38131706)
chr5 (11-60)||(873859-873907)
chr5 (17-59)||(14531757-14531799)
[»] chr4 (25 HSPs)
chr4 (7-60)||(990733-990786)
chr4 (7-60)||(15665044-15665097)
chr4 (7-60)||(29734453-29734506)
chr4 (7-60)||(45427095-45427148)
chr4 (7-60)||(45427411-45427464)
chr4 (7-60)||(50857904-50857957)
chr4 (7-60)||(50858220-50858273)
chr4 (7-60)||(52214507-52214560)
chr4 (7-60)||(53739749-53739802)
chr4 (7-60)||(53740074-53740127)
chr4 (7-60)||(990931-990983)
chr4 (7-60)||(17222795-17222848)
chr4 (11-60)||(51469378-51469427)
chr4 (12-60)||(29669526-29669574)
chr4 (9-60)||(32988431-32988482)
chr4 (7-60)||(18862549-18862602)
chr4 (7-60)||(23018362-23018415)
chr4 (11-60)||(29669840-29669889)
chr4 (11-60)||(48843180-48843229)
chr4 (11-60)||(53738371-53738420)
chr4 (16-60)||(13254296-13254340)
chr4 (11-60)||(36558629-36558678)
chr4 (11-60)||(43972247-43972296)
chr4 (17-60)||(54595229-54595272)
chr4 (26-60)||(32784308-32784342)
[»] chr3 (23 HSPs)
chr3 (7-60)||(27219221-27219274)
chr3 (7-60)||(45443172-45443225)
chr3 (7-60)||(54368931-54368984)
chr3 (7-60)||(4255402-4255455)
chr3 (7-60)||(44573534-44573587)
chr3 (7-56)||(44573851-44573900)
chr3 (14-60)||(4255762-4255808)
chr3 (7-60)||(4256126-4256179)
chr3 (7-60)||(13769450-13769503)
chr3 (11-60)||(24860223-24860272)
chr3 (7-56)||(34715614-34715663)
chr3 (7-60)||(41380616-41380669)
chr3 (14-60)||(4255944-4255990)
chr3 (7-60)||(43101530-43101583)
chr3 (7-60)||(44573218-44573271)
chr3 (7-60)||(48685477-48685530)
chr3 (12-59)||(9658193-9658240)
chr3 (11-60)||(3985619-3985668)
chr3 (17-60)||(662620-662662)
chr3 (11-60)||(14170162-14170211)
chr3 (7-60)||(50204016-50204065)
chr3 (25-60)||(34250528-34250563)
chr3 (26-60)||(8936463-8936497)
[»] chr2 (21 HSPs)
chr2 (7-60)||(43169134-43169187)
chr2 (7-60)||(43195676-43195729)
chr2 (7-60)||(21214360-21214413)
chr2 (7-60)||(42768491-42768544)
chr2 (12-60)||(3977167-3977215)
chr2 (10-60)||(21214047-21214097)
chr2 (7-60)||(6183532-6183585)
chr2 (7-60)||(7877736-7877789)
chr2 (11-60)||(10849654-10849703)
chr2 (7-60)||(30166238-30166291)
chr2 (7-59)||(11968947-11968999)
chr2 (7-60)||(3976314-3976367)
chr2 (7-60)||(3976846-3976899)
chr2 (7-60)||(17509001-17509054)
chr2 (11-60)||(25441588-25441637)
chr2 (10-53)||(18902026-18902069)
chr2 (7-60)||(3976629-3976682)
chr2 (11-60)||(5424919-5424968)
chr2 (7-60)||(23054218-23054271)
chr2 (17-60)||(20135149-20135192)
chr2 (26-60)||(35872805-35872839)
[»] chr1 (16 HSPs)
chr1 (7-60)||(35926380-35926433)
chr1 (7-60)||(8520394-8520447)
chr1 (7-60)||(31305603-31305656)
chr1 (7-60)||(15013417-15013470)
chr1 (7-60)||(20735414-20735467)
chr1 (7-60)||(17419679-17419732)
chr1 (7-60)||(19937202-19937255)
chr1 (25-60)||(37600789-37600824)
chr1 (11-60)||(4022288-4022337)
chr1 (7-60)||(33879937-33879990)
chr1 (7-60)||(33964265-33964318)
chr1 (11-60)||(45264555-45264604)
chr1 (12-60)||(43423194-43423242)
chr1 (13-60)||(2697496-2697543)
chr1 (17-60)||(6868026-6868069)
chr1 (7-54)||(8520252-8520299)
[»] scaffold0054 (1 HSPs)
scaffold0054 (7-59)||(11186-11238)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 2e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 32931351 - 32931298
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32931351 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 32931298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 21653268 - 21653218
Alignment:
Q  10 tcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21653268 tcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 21653218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 18905801 - 18905748
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  18905801 aggtcgcaaattaggcgactaggggcggaccgcaattaaggcggaatttccaac 18905748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 36997111 - 36997058
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  36997111 aggtcacaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 36997058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 3184066 - 3184115
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  3184066 cgcaatttaggcgactaggggcggaccgcaataaaggcggaatttacaac 3184115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 31766942 - 31766893
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  31766942 cgcaatttaggtgactaggggcggaccgcaatgaaggcggaatttccaac 31766893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 23027669 - 23027717
Alignment:
Q  12 gcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  23027669 gcaatttaggcgactaggggcggactgcaatgaaggcggaatttccaac 23027717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 23027991 - 23028040
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||  ||||||||| ||||||||| |||||||||||||||||    
T  23027991 cgcaatttaggtgactaggggcagaccgcaataaaggcggaatttccaac 23028040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 40754383 - 40754338
Alignment:
Q  13 caatttaggcaactaggggcggaccgcaattaaggcggaatttcca 58  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||    
T  40754383 caatttaggcgactaggggcggaccgcaataaaggcggattttcca 40754338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 20298696 - 20298728
Alignment:
Q  28 ggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||||||||||||||||||||    
T  20298696 ggggcggaccgcaattaaggcggaatttccaac 20298728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 21085328 - 21085360
Alignment:
Q  28 ggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||||||||||||||||||||    
T  21085328 ggggcggaccgcaattaaggcggaatttccaac 21085360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 22277464 - 22277416
Alignment:
Q  12 gcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||| ||||    
T  22277464 gcaatttaggcgactaggggcggaccgcaataaagacggaattttcaac 22277416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 21653745 - 21653700
Alignment:
Q  10 tcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttc 56  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||    
T  21653745 tcgcaatttaggcgactagggg-ggactgcaattaaggcggaatttc 21653700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 34248320 - 34248277
Alignment:
Q  17 ttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||| ||||||||||||  ||||| |||||||||||||||||    
T  34248320 ttaggcgactaggggcggattgcaataaaggcggaatttccaac 34248277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 45227328 - 45227362
Alignment:
Q  26 taggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||  ||||||||||||||||||||||||||    
T  45227328 taggggctaaccgcaattaaggcggaatttccaac 45227362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-20; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 257426 - 257479
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  257426 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 257479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 41670813 - 41670760
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41670813 aggtcgcaatttaggcaactaggggcggactgcaattaaggcggaatttccaac 41670760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 43168052 - 43168105
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43168052 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 43168105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 1661350 - 1661403
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  1661350 aggtcgcaatttaggcaactaggggcgaaccgcgattaaggcggaatttccaac 1661403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 1663767 - 1663816
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1663767 cgcaattaaggcaactaggggcggaccgcaattaaggcggaatttccaac 1663816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 40121777 - 40121830
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40121777 aggtagcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 40121830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 40122085 - 40122138
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  40122085 aggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaac 40122138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 7135402 - 7135455
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  7135402 aggtcgcaatttaggtgactaggggcggaccgcaattaaagcggaatttccaac 7135455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 30296574 - 30296521
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  30296574 aggtcgcaatttaggcgactaggggcggatcacaattaaggcggaatttccaac 30296521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 28909973 - 28909924
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  28909973 cgcaatttaggcgactaggggcggaccacaataaaggcggaatttccaac 28909924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 29780400 - 29780352
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    |||||||||||| ||||||||||||||||||| |||| |||||||||||    
T  29780400 cgcaatttaggcgactaggggcggaccgcaataaaggtggaatttccaa 29780352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 41670529 - 41670480
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttc 56  Q
    ||||||||| |||||| ||||||||||||||  |||||||||||||||||    
T  41670529 aggtcgcaaattaggcgactaggggcggaccaaaattaaggcggaatttc 41670480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 21033986 - 21034021
Alignment:
Q  25 ctaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||||| |||||||||||||||||    
T  21033986 ctaggggcggaccgcaatgaaggcggaatttccaac 21034021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 37272188 - 37272231
Alignment:
Q  17 ttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||| |||||||| |||||||||| |||||||||||||||||    
T  37272188 ttaggcgactaggggtggaccgcaataaaggcggaatttccaac 37272231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 8585033 - 8584999
Alignment:
Q  24 actaggggcggaccgcaattaaggcggaatttcca 58  Q
    |||||||||||||||||||||||| ||||||||||    
T  8585033 actaggggcggaccgcaattaaggtggaatttcca 8584999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 33582386 - 33582422
Alignment:
Q  24 actaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  33582386 actaggggcagaccgcaattaaggcagaatttccaac 33582422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 3973088 - 3973053
Alignment:
Q  25 ctaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| |||||||||| |||||||||||||||||    
T  3973088 ctaggggtggaccgcaatgaaggcggaatttccaac 3973053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 12305224 - 12305266
Alignment:
Q  17 ttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    ||||||| ||| |||| ||||||||| ||||||||||||||||    
T  12305224 ttaggcagctaagggcagaccgcaataaaggcggaatttccaa 12305266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-20; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 19753763 - 19753816
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19753763 aggtcgcaatttaggcaactaggggcagaccgcaattaaggcggaatttccaac 19753816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 1408956 - 1408903
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  1408956 aggtcgcaatttaggcgacaaggggcggaccgcaattaaggcggaatttccaac 1408903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 10733597 - 10733650
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  10733597 aggtcgcaatttaggcgactagggacggactgcaattaaggcggaatttccaac 10733650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 21067216 - 21067269
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| ||||||| || |||||||||||||||||||||||||||||||||||||    
T  21067216 aggtcacaatttatgcgactaggggcggaccgcaattaaggcggaatttccaac 21067269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 24055272 - 24055321
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  24055272 cgcaatttaggcgactaggggcggaccgcaattaaggcagaatttccaac 24055321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 30539175 - 30539127
Alignment:
Q  12 gcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  30539175 gcaatttaggcgactaggggcggaccgcaataaaggcggaatttccaac 30539127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 10418500 - 10418550
Alignment:
Q  10 tcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||| |||| ||||||||||||||||||||||||||||| |||||||    
T  10418500 tcgcaattaaggcgactaggggcggaccgcaattaaggcggaaattccaac 10418550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 1745001 - 1745054
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||| | |||||||||| ||||||||||||||||||||    
T  1745001 aggtcgcaatttaggcgactggaggcggaccgcgattaaggcggaatttccaac 1745054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 8143959 - 8143910
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  8143959 cgcaattaaggcgactaggggcagaccgcaattaaggcggaatttccaac 8143910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 21089007 - 21089060
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||    
T  21089007 aggtcacaattaaggcgactaggggcggaccgcaattaaggcagaatttccaac 21089060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 28068577 - 28068626
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttc 56  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  28068577 aggtcacaatttaggcgactaggggcggaccgcatttaaggcggaatttc 28068626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 21043940 - 21043992
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    ||||| ||||||| || ||||||||||||||||||||||||| ||||||||||    
T  21043940 aggtcacaatttatgcgactaggggcggaccgcaattaaggcagaatttccaa 21043992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 22911333 - 22911385
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    |||||||||||||||| ||||||||||||||| ||| |||| |||||||||||    
T  22911333 aggtcgcaatttaggcgactaggggcggaccgtaataaaggtggaatttccaa 22911385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 19054438 - 19054385
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| |||| ||||||||| || ||||||||||||||||||| ||||    
T  19054438 aggtcgcaattaaggcgactaggggctgatcgcaattaaggcggaattttcaac 19054385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 22889727 - 22889779
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    |||||||||||||||| |||||||||| |||| ||| |||| |||||||||||    
T  22889727 aggtcgcaatttaggcgactaggggcgaaccgtaataaaggtggaatttccaa 22889779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 12134646 - 12134695
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||  ||||||||||||||  ||| |||||||||||||||||    
T  12134646 cgcaatttaggtgactaggggcggaccagaataaaggcggaatttccaac 12134695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 1206040 - 1206075
Alignment:
Q  25 ctaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||||| ||||| |||||||||||    
T  1206040 ctaggggcggaccgcaatgaaggcagaatttccaac 1206075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 13843642 - 13843589
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13843642 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 13843589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 27760020 - 27759966
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaacc 61  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  27760020 aggtcgcaatttaggctactaggggaggaccgcaattaaggcggaatttccaacc 27759966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-17
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 12595264 - 12595315
Alignment:
Q  9 gtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  12595264 gtcgaaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 12595315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 13843958 - 13843905
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  13843958 aggtcgcaatttaggcgactaggggcggaccacaattaaggtggaatttccaac 13843905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 27760336 - 27760283
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||    
T  27760336 aggtcgcaatttaggcgaccaggggcagaccgcaattaaggcggaatttccaac 27760283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 20837754 - 20837706
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaattt 55  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  20837754 aggtcgcaatttaggcgactaggggcggaccgctattaaggcggaattt 20837706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 37995797 - 37995846
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  37995797 cgcaatttaggcgactaggggcagaccgcaataaaggcggaatttccaac 37995846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 20811399 - 20811351
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaattt 55  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||||||    
T  20811399 aggtcggaatttaggcgactaggggcggaccgctattaaggcggaattt 20811351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 17016254 - 17016303
Alignment:
Q  9 gtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  17016254 gtcgcaatttaggca-ctaggg-cggaccgcaattaaggcggaatttccaac 17016303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 1028252 - 1028304
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||| ||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  1028252 aggttgcaatttaggcgactagggg-ggactgcaattaaggcggaatttccaac 1028304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 28010279 - 28010328
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||  ||||||||| ||||||||| |||||||||||||||||    
T  28010279 cgcaatttaggtgactaggggcagaccgcaataaaggcggaatttccaac 28010328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 30588224 - 30588257
Alignment:
Q  27 aggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||||||||||||||||||||||||||    
T  30588224 aggggcggaccgcaattaaggcggaatttccaac 30588257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 28009965 - 28010009
Alignment:
Q  16 tttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||    
T  28009965 tttaggcgactaggggcagactgcaattaaggcggaatttccaac 28010009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 24918103 - 24918060
Alignment:
Q  13 caatttaggcaactaggggcggaccgcaattaaggcggaatttc 56  Q
    |||||||||| | ||||||||||||||||| |||||||||||||    
T  24918103 caatttaggcgattaggggcggaccgcaatgaaggcggaatttc 24918060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 24994015 - 24993968
Alignment:
Q  9 gtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttc 56  Q
    |||||||||||||| | ||||||||||||||||| |||| ||||||||    
T  24994015 gtcgcaatttaggcgattaggggcggaccgcaataaaggtggaatttc 24993968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 38131706 - 38131659
Alignment:
Q  13 caatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||| | ||||||||||||||||||| ||||| |||||||||||    
T  38131706 caatttagacgactaggggcggaccgcaataaaggcagaatttccaac 38131659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 873859 - 873907
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| || |||||||||||||||| ||||||| |||||||||    
T  873859 cgcaatttaggccac-aggggcggaccgcaataaaggcgggatttccaac 873907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 14531757 - 14531799
Alignment:
Q  17 ttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    ||||||| |||||||| ||||||||| |||| |||||||||||    
T  14531757 ttaggcagctaggggcagaccgcaatgaaggtggaatttccaa 14531799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 990786 - 990733
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  990786 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 990733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 15665097 - 15665044
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  15665097 aggtcgcaatttaggcgactgggggcggaccgcaattaaggcggaatttccaac 15665044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 29734506 - 29734453
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  29734506 aggtcgcaatttaggcgactaggggcggaccacaattaaggcggaatttccaac 29734453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 45427095 - 45427148
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  45427095 aggtcgcaatttaggcgactaggggcggacagcaattaaggcggaatttccaac 45427148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 45427411 - 45427464
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  45427411 aggtcgcaatttaggcgactaggggcggaccgcagttaaggcggaatttccaac 45427464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 50857957 - 50857904
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  50857957 aggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaac 50857904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 50858273 - 50858220
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  50858273 aggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaac 50858220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 52214560 - 52214507
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  52214560 aggtctcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 52214507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 53739802 - 53739749
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  53739802 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcagaatttccaac 53739749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 53740127 - 53740074
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  53740127 aggtcacaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 53740074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 990983 - 990931
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  990983 aggtcgcaatttaggcgactaggggcggaccgcaattaaggc-gaatttccaac 990931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 17222795 - 17222848
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  17222795 aggtcgcaatttaggcgactagaggcggaccgcaattaaggtggaatttccaac 17222848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 51469427 - 51469378
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  51469427 cgcaatttaggcgactaggggcggaccgcaataaaggcggaatttccaac 51469378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 29669526 - 29669574
Alignment:
Q  12 gcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29669526 gcaattaaggcgactaggggcggaccgcaattaaggcggaatttccaac 29669574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 32988431 - 32988482
Alignment:
Q  9 gtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  32988431 gtcgcaatttaggtgactagcggcggaccgcaattaaggcggaatttccaac 32988482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 18862602 - 18862549
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||    
T  18862602 aggttgcaatttaggcgactagaggcggaccgcgattaaggcggaatttccaac 18862549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 23018415 - 23018362
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||    
T  23018415 aggtcgcaatttaggcgactagggacggaccgcaatgaaggcggaattaccaac 23018362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 29669840 - 29669889
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  29669840 cgcaattaaggcgactaggggtggaccgcaattaaggcggaatttccaac 29669889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 48843180 - 48843229
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||    
T  48843180 cgcaatttaggcgactaggggtggaccgcaataaaggcggaatttccaac 48843229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 53738371 - 53738420
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| |||||||| |||||||||| ||||||||||| |||||    
T  53738371 cgcaatttaggcgactaggggtggaccgcaataaaggcggaattaccaac 53738420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 13254340 - 13254296
Alignment:
Q  16 tttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||    
T  13254340 tttaggcgactaggggcagaccgcaataaaggcggaatttccaac 13254296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 36558629 - 36558678
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| |||  ||||||||||||| ||||||||||| |||||||||||    
T  36558629 cgcaattaaggtgactaggggcggactgcaattaaggcagaatttccaac 36558678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 43972296 - 43972247
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| ||| ||||| ||||||||| |||| ||||||||||||    
T  43972296 cgcaatttaggcgactgggggcagaccgcaatgaaggtggaatttccaac 43972247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 54595229 - 54595272
Alignment:
Q  17 ttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| |||||| ||| ||||||| |||||||||||||||||    
T  54595229 ttaggcagctagggacggtccgcaatgaaggcggaatttccaac 54595272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 32784342 - 32784308
Alignment:
Q  26 taggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||| |||||||| |||||||||||||||||||    
T  32784342 taggggtggaccgcagttaaggcggaatttccaac 32784308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-20; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 27219274 - 27219221
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27219274 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 27219221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 45443225 - 45443172
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45443225 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 45443172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 54368984 - 54368931
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54368984 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 54368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 4255455 - 4255402
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  4255455 aggtcccaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 4255402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 44573587 - 44573534
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  44573587 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatctccaac 44573534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 44573900 - 44573851
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttc 56  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44573900 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttc 44573851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 4255808 - 4255762
Alignment:
Q  14 aatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  4255808 aatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 4255762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 4256179 - 4256126
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  4256179 aggttgcaatttaggcgactagggggggaccgcaattaaggcggaatttccaac 4256126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 13769450 - 13769503
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  13769450 aggttgcaatttaggcgactaggggcggaccgcaattaaagcggaatttccaac 13769503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 24860223 - 24860272
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  24860223 cgcaatttaggcaactaggggcggaccgcaataaaggcagaatttccaac 24860272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 34715614 - 34715663
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttc 56  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  34715614 aggtcgcaatttaggcgactaggggcggaacgcaattaaggcggaatttc 34715663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 41380669 - 41380616
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  41380669 aggtcgcaattaaggcgactaggggcgggccgcaattaaggcggaatttccaac 41380616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 4255990 - 4255944
Alignment:
Q  14 aatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4255990 aatttaggcgactaggggcggaccgcaattaaggcggaattcccaac 4255944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 43101530 - 43101583
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  43101530 aggtcgcaatttaggcgactagggacggacctcaattaaggcagaatttccaac 43101583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 44573271 - 44573218
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  44573271 aggtcgcaatttaggcgactgggggcggatcgcaactaaggcggaatttccaac 44573218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 48685477 - 48685530
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  48685477 aggtcacaatttaggcgactagaggcggaccgcaattaaggcagaatttccaac 48685530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9658240 - 9658193
Alignment:
Q  12 gcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  9658240 gcaatttaggcgactaggggctgacagcaattaaggcggaatttccaa 9658193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 3985668 - 3985619
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| |||| ||||||||||||| ||||||||||| |||||||||||    
T  3985668 cgcaattaaggcgactaggggcggactgcaattaaggcagaatttccaac 3985619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 662662 - 662620
Alignment:
Q  17 ttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  662662 ttaggcgactaggggcggaccgcaatt-aggcggaatttccaac 662620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 14170162 - 14170211
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||||  |||||||||| ||||||| ||||||||| |||||||    
T  14170162 cgcaatttaggcggctaggggcgggccgcaataaaggcggaacttccaac 14170211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 50204016 - 50204065
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| |||||||||| ||||||||||||||||    |||||||||||||||||    
T  50204016 aggtcacaatttaggcgactaggggcggaccgc----aaggcggaatttccaac 50204065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 34250528 - 34250563
Alignment:
Q  25 ctaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| || |||||||||||||||||||||||||||    
T  34250528 ctaggagctgaccgcaattaaggcggaatttccaac 34250563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 8936463 - 8936497
Alignment:
Q  26 taggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||| |||||||||| |||||||||||||||||    
T  8936463 taggggaggaccgcaataaaggcggaatttccaac 8936497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 43169187 - 43169134
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43169187 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 43169134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 43195729 - 43195676
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43195729 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 43195676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 21214360 - 21214413
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  21214360 aggtcacaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 21214413  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 42768491 - 42768544
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  42768491 aggtcgcaatttaggcgactaggggcgaaccgcaattaaggcggaatttccaac 42768544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 3977167 - 3977215
Alignment:
Q  12 gcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3977167 gcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 3977215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 21214047 - 21214097
Alignment:
Q  10 tcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  21214047 tcgcaatttaggcgactaggggcggaccacaattaaggcggaatttccaac 21214097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 6183532 - 6183585
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  6183532 aggtcgcaatttaggcgactagggacggaccacaattaaggcggaatttccaac 6183585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 7877789 - 7877736
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  7877789 aggtcgcaatttaggcgactagggacggaccgcaattaaagcggaatttccaac 7877736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 10849654 - 10849703
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  10849654 cgcaattaaggcaactaggggcggaccgcaataaaggcggaatttccaac 10849703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 30166238 - 30166291
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  30166238 aggtcgcaattaaggcgactaggggcggaccacaattaaggcggaatttccaac 30166291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 11968999 - 11968947
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  11968999 aggtcacaatttaggcgactaggggcggactgcaattaaggcggaatttccaa 11968947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 3976314 - 3976367
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||| ||||||||| | ||||||||||    
T  3976314 aggtcgcaatttaggcgactaggggcggaccacaattaaggtgaaatttccaac 3976367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 3976846 - 3976899
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  3976846 aggtcgcaatgtaggcgactaggggcggatcgcaattaaagcggaatttccaac 3976899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 17509054 - 17509001
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| |||| || |||||||||| |||||||||||||||||||||||    
T  17509054 aggtcgcaattaaggcgacgaggggcggactgcaattaaggcggaatttccaac 17509001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 25441637 - 25441588
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  25441637 cgcaatttaggcgactaggggcggaccgcaataaaggtggaatttccaac 25441588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 18902026 - 18902069
Alignment:
Q  10 tcgcaatttaggcaactaggggcggaccgcaattaaggcggaat 53  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  18902026 tcgcaatttaggcgactaggggcggaccacaattaaggcggaat 18902069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 3976629 - 3976682
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| | |||||| ||||||| ||||||| ||||||||||||    
T  3976629 aggtcgcaatttaggcgattaggggtggaccgcgattaaggtggaatttccaac 3976682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 5424919 - 5424968
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| |||||||  |||| |||||||||| ||||||||||||    
T  5424919 cgcaatttaggcgactagggaaggacagcaattaaggtggaatttccaac 5424968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 23054271 - 23054218
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||| | |||  |||| |||||||||||||| ||||||||||||    
T  23054271 aggtcgcaatttagacgactccgggcagaccgcaattaaggtggaatttccaac 23054218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 20135149 - 20135192
Alignment:
Q  17 ttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||| || |||| |||||||||| |||||||||||||||||    
T  20135149 ttaggcagcttggggaggaccgcaatgaaggcggaatttccaac 20135192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 35872839 - 35872805
Alignment:
Q  26 taggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| |||| |||||||||||||||||    
T  35872839 taggggcggaccacaatgaaggcggaatttccaac 35872805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 35926380 - 35926433
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35926380 aggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaac 35926433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 8520394 - 8520447
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  8520394 aggtcgcaatttaggcgactaggggcggaccgcaattaaagcggaatttccaac 8520447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31305656 - 31305603
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  31305656 aggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaac 31305603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 15013470 - 15013417
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  15013470 aggtcgcaatttaggcgactaggggcggaccgcaactaaggcagaatttccaac 15013417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 20735467 - 20735414
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  20735467 aggtcgcaatttaggcgactaggggcagaccgcaattaaggcggaattttcaac 20735414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 17419732 - 17419679
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||    
T  17419732 aggtcgcaattaaggcgactaggggcagaccacaattaaggcggaatttccaac 17419679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 19937202 - 19937255
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||| | |||||||||||| |||||||||| |||||||||||    
T  19937202 aggtcgcaatttaggcgattaggggcggaccacaattaaggcagaatttccaac 19937255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 37600824 - 37600789
Alignment:
Q  25 ctaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||||||||||||||||||||||||||||    
T  37600824 ctaggggcggaccgcaattaaggcggaatttccaac 37600789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 4022288 - 4022337
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| || |||||||||||||||| |||||| ||||||||||    
T  4022288 cgcaatttaggcgacaaggggcggaccgcaataaaggcgaaatttccaac 4022337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 33879937 - 33879990
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||  |||||||| |||||||||| ||||||| |||||||||    
T  33879937 aggtcgcaatttaggtgactaggggtggaccgcaataaaggcggtatttccaac 33879990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 33964318 - 33964265
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||||||  |||||||| |||||||||| ||||||| |||||||||    
T  33964318 aggtcgcaatttaggtgactaggggtggaccgcaataaaggcggtatttccaac 33964265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 45264604 - 45264555
Alignment:
Q  11 cgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||||| || |||||||||||||||| ||||| |||||||||||    
T  45264604 cgcaatttaggcgacaaggggcggaccgcaataaaggcagaatttccaac 45264555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 43423242 - 43423194
Alignment:
Q  12 gcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    ||||||||||| |||||||||||||  |||| |||||||||||||||||    
T  43423242 gcaatttaggcgactaggggcggacaacaataaaggcggaatttccaac 43423194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 2697496 - 2697543
Alignment:
Q  13 caatttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||||||| |||| ||| |||||||||| |||||||||||||||||    
T  2697496 caatttaggcgactaagggtggaccgcaataaaggcggaatttccaac 2697543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 6868069 - 6868026
Alignment:
Q  17 ttaggcaactaggggcggaccgcaattaaggcggaatttccaac 60  Q
    |||||| | ||||||| ||||||||| |||||||||||||||||    
T  6868069 ttaggcgattaggggcagaccgcaatgaaggcggaatttccaac 6868026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 8520252 - 8520299
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatt 54  Q
    |||||||||||||||  |||||||||  |||||||||||||| |||||    
T  8520252 aggtcgcaatttaggtgactaggggcaaaccgcaattaaggcagaatt 8520299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 11186 - 11238
Alignment:
Q  7 aggtcgcaatttaggcaactaggggcggaccgcaattaaggcggaatttccaa 59  Q
    |||||||||||||||| |||||||||| |||| ||| |||| |||||||||||    
T  11186 aggtcgcaatttaggcgactaggggcgtaccgtaataaaggtggaatttccaa 11238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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