View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5822-4 (Length: 151)
Name: Solexa-NF5822-4
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5822-4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 7e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 7e-78
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 47582758 - 47582608
Alignment:
| Q |
1 |
cacagaaagtagaaacataacacctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttca |
100 |
Q |
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| T |
47582758 |
cacagaaagtagaaacataacatctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttca |
47582659 |
T |
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| Q |
101 |
ttagagggacaggaaaagattattggtgatttcaattcttgttctcccaag |
151 |
Q |
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| T |
47582658 |
ttagagggacaggaaaagattattggtgatttcaattcttgttctcccaag |
47582608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 47570847 - 47570785
Alignment:
| Q |
71 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggtgatttca |
134 |
Q |
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| T |
47570847 |
taaaatattgtttaactatttat-ttttcattagagggataggaaaagattattggtgatttca |
47570785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 47573269 - 47573217
Alignment:
| Q |
46 |
aaagctaacaccctctcctaattgataaaatattgatgaactaattatattttc |
99 |
Q |
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| T |
47573269 |
aaagctaa-accctctcctagttcttaaaatattgatgaactacttatattttc |
47573217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 47566304 - 47566249
Alignment:
| Q |
71 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggt |
127 |
Q |
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| T |
47566304 |
taaaatattgattaactatttat-ttttcatttgagggataagaaaagattattggt |
47566249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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