View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5822-7 (Length: 142)
Name: Solexa-NF5822-7
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5822-7 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 8e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 8483407 - 8483543
Alignment:
| Q |
5 |
gaacttgcacaaagtttagctattgaaagaaattaaagaataaaagctaaaaattccataaatgcaaggatgggtatggttcgattcaggatgaaaactg |
104 |
Q |
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| T |
8483407 |
gaacttgcacaaagtttagctattgaaagaaattaaagaataaaagctaaaaactccataaatgcatggatgggtatggttcgattcaggatgaaaactg |
8483506 |
T |
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| Q |
105 |
aaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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| T |
8483507 |
-aacaaacagaattaaattgtttgttaaatttaaaata |
8483543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 10334135 - 10334182
Alignment:
| Q |
95 |
atgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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|||||||||||| | ||||||||| |||||||||||||||| |||||| |
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| T |
10334135 |
atgaaaactgaattgaaccgaactgaattgtttgttaaattcaaaata |
10334182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 2259761 - 2259823
Alignment:
| Q |
75 |
tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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| T |
2259761 |
tgggtatggttcggttcaagatgaaaactgaa-----ccgaactgaattgtttgttaaatttaaaata |
2259823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 3639940 - 3639875
Alignment:
| Q |
72 |
ggatgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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| T |
3639940 |
ggatgggcatggttcatttcaggatgaaaactgaa-----ccgaactgaaatgtttgttaaatttaaaata |
3639875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 35699761 - 35699699
Alignment:
| Q |
75 |
tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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|||| |||||||| ||| |||||||||||||| ||||||| ||||||||| ||||||||||||| |
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| T |
35699761 |
tgggcatggttcggttcgggatgaaaactgaa-----ccgaactgaattgtttgataaatttaaaata |
35699699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 12852324 - 12852277
Alignment:
| Q |
93 |
ggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaa |
140 |
Q |
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| T |
12852324 |
ggatgaaaactgaaccgaaccgatctaaattgtttgttaaatttaaaa |
12852277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 20116473 - 20116411
Alignment:
| Q |
80 |
atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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|||| ||||||| ||||||||| ||||| |||| ||||||| |||||||| ||||||||||| |
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| T |
20116473 |
atggatcgattcgggatgaaaattgaaactaaccaaactaaactgtttgtttaatttaaaata |
20116411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 43951300 - 43951346
Alignment:
| Q |
96 |
tgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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|||||| |||| ||||| ||||||||||||||| ||||||||||||| |
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| T |
43951300 |
tgaaaattgaattaaactgaactaaattgtttgctaaatttaaaata |
43951346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 22786719 - 22786657
Alignment:
| Q |
80 |
atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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|||||||| ||| |||||||||||||| ||||||||| || |||||| ||||||||||||| |
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| T |
22786719 |
atggttcggttcgggatgaaaactgaaccgaaccgaactgaactgtttgctaaatttaaaata |
22786657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 34821626 - 34821674
Alignment:
| Q |
94 |
gatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaata |
142 |
Q |
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||||||||||||| |||||||||| || |||||| ||||||||||||| |
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| T |
34821626 |
gatgaaaactgaaccaaaccgaactgaactgtttgctaaatttaaaata |
34821674 |
T |
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