View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5822-8 (Length: 139)
Name: Solexa-NF5822-8
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5822-8 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 9e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 40260405 - 40260270
Alignment:
| Q |
4 |
ataagaacgataccacattttcatccaatattttaaggcactaagtgtatcaatcttttcacttatatattgttcaaccttcaatcttttactcaatgtt |
103 |
Q |
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| T |
40260405 |
ataagaacgataccacattttcacccaatattttaaggcactaagtgtatcaattttttcacttatatgttgttcaaccttcaatcttctactcaatgtt |
40260306 |
T |
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| Q |
104 |
aaactataacttatatttgatacatcacaacattat |
139 |
Q |
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| T |
40260305 |
aaactataacttatatttgatacatcacaacattat |
40260270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 35226858 - 35226953
Alignment:
| Q |
7 |
agaacgataccacattttcatccaatattttaaggcactaagtgtatcaatcttttcacttatatattgttcaaccttcaatcttttactcaatgtt |
103 |
Q |
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| T |
35226858 |
agaatgatatcacattttcatccaatattttaaggcactgagtgtatgagt-ttttcacttatatgttattcaaccttcactcttccactcaatgtt |
35226953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 44904778 - 44904644
Alignment:
| Q |
4 |
ataagaacgataccacattttcatccaatattttaaggcactaagtgtatcaatcttttcacttatatattgttcaaccttcaatcttttactcaatgtt |
103 |
Q |
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| T |
44904778 |
ataagaacgataccacattttcacccaatattttatggcactaagtgtatcaat-ttttcacttatatgttgttcaaccttcaatcttctactcaatgtt |
44904680 |
T |
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| Q |
104 |
aaactataacttatatttgatacatcacaacattat |
139 |
Q |
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| T |
44904679 |
aaactataacttatatttgatacatcacaacattat |
44904644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 52543161 - 52543296
Alignment:
| Q |
4 |
ataagaacgataccacattttcatccaatattttaaggcactaagtgtatcaatcttttcacttatatattgttcaaccttcaatcttttactcaatgtt |
103 |
Q |
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| T |
52543161 |
ataagaacgataccacattttcacccaatattttaaggcactaagtgtatttatattttcacttatatgttgttcaaccttcaatcttctactcaatgtt |
52543260 |
T |
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| Q |
104 |
aaactataacttatatttgatacatcacaacattat |
139 |
Q |
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| T |
52543261 |
agactataacttatatttgatacatcacaacattat |
52543296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 3838308 - 3838443
Alignment:
| Q |
4 |
ataagaacgataccacattttcatccaatattttaaggcactaagtgtatcaatcttttcacttatatattgttcaaccttcaatcttttactcaatgtt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
3838308 |
ataagaacgataccacattttcatccaatattttaaggcgctaagtgtatcaattttttcacttatatgttgttcaaccttcaatcttctactcaatgtt |
3838407 |
T |
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| Q |
104 |
aaactataacttatatttgatacatcacaacattat |
139 |
Q |
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| T |
3838408 |
agactataacttatatttgatatatcacaatattat |
3838443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 3418071 - 3418144
Alignment:
| Q |
64 |
acttatatattgttcaaccttcaatcttttactcaatgttaaactataacttatatttgatacatcacaacatt |
137 |
Q |
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| T |
3418071 |
acttatatgttgtccaaccttcactcttttattcaatattgaaatgtaactgacatttgatacattacaacatt |
3418144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 40599809 - 40599862
Alignment:
| Q |
4 |
ataagaacgataccacattttcatccaatattttaaggcactaagtgtatcaat |
57 |
Q |
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| T |
40599809 |
ataagaacgatactatattttcacccaatattttaaggcactaagtgtatcaat |
40599862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 3532284 - 3532355
Alignment:
| Q |
12 |
gataccacattttcatccaatattttaaggcactaagtgtatcaatcttttcacttatatattgttcaacct |
83 |
Q |
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| T |
3532284 |
gataccacattttcactcaatattttaaggtcctaagtgtatgagttttttcacttttatgttgttcaacct |
3532355 |
T |
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