View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5823-12 (Length: 144)
Name: Solexa-NF5823-12
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5823-12 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 4e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 46090456 - 46090338
Alignment:
| Q |
8 |
catatcactaatcaaaaggattgaaaagaaaactatacatatacacctttcatcacccaccccaccaccaagctgtaaagtattgattacccacaatttt |
107 |
Q |
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| T |
46090456 |
catatcactaatcaaaaggattgaaaagaaaactatacatatacacctttcatcacccaccccaccaccaagctgtaaagtattgattacccacaatttt |
46090357 |
T |
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| Q |
108 |
ccccctttctccctagcct |
126 |
Q |
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||||||||||||||||||| |
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| T |
46090356 |
ccccctttctccctagcct |
46090338 |
T |
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