View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5823-15 (Length: 138)
Name: Solexa-NF5823-15
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5823-15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 2e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 11821986 - 11821872
Alignment:
| Q |
25 |
aatcattacagccagcttcacaaaaggttgggaagaatataacc-accataacaaaccaacaaagctaaagataaacaacatacagctccatatctgaaa |
123 |
Q |
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| T |
11821986 |
aatcattacagccagcttcacaaaaggttaggaagaatataacccaccataacaaaccaacaaagctaaaaataaacaacatactgctccatatctgaag |
11821887 |
T |
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| Q |
124 |
ggataagccaaatga |
138 |
Q |
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| T |
11821886 |
ggataagccaaatga |
11821872 |
T |
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Target: chr7; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 11832438 - 11832326
Alignment:
| Q |
27 |
tcattacagccagcttcacaaaaggttgggaagaatataacc-accataacaaaccaacaaagctaaagataaacaacatacagctccatatctgaaagg |
125 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
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| T |
11832438 |
tcattacagccagcttcacaaaaggttaggaagaatataacccaccataacaaaccaacaaagctaaaaataaacaacatactgctccatatctgaaggg |
11832339 |
T |
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| Q |
126 |
ataagccaaatga |
138 |
Q |
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| T |
11832338 |
ataagccaaatga |
11832326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 11817555 - 11817473
Alignment:
| Q |
57 |
aagaatataacc-accataacaaaccaacaaagctaaagataaacaacatacagctccatatctgaaaggataagccaaatga |
138 |
Q |
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|||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11817555 |
aagaatataacccaccaaaacaaaccaacaaaggtaaagataaacaacatacagctccatatctgaaaggataagccaaatga |
11817473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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