View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5823-2 (Length: 269)
Name: Solexa-NF5823-2
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5823-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 46089792 - 46090060
Alignment:
| Q |
1 |
atggtgaagttatgtatatgagagctaggtttgagagaattgttggctctagagattctgaagctttctatatgatgaatcctgatagcaatggtgctcc |
100 |
Q |
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| T |
46089792 |
atggtgaagttatgtatatgagagctaggtttgagagaattgttggctctagagattctgaagctttctatatgatgaatcctgatagcaatggtgctcc |
46089891 |
T |
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| Q |
101 |
tgagcttagtgtttatttgcttagagtttaatctcttattaacagtattagcctcttgaaaagctttgctaattactgtttagttaatactttaannnnn |
200 |
Q |
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| T |
46089892 |
tgagcttagtgtttatttgcttagagtttaatctcttattaacagtattagcctcttgaaaagctttgctaattactgtttagttaatactttaattttc |
46089991 |
T |
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| Q |
201 |
nnnnnnnnnnnnnngttctttgtagacttgatgcatgtttggaatcacggtaaatttaacaaaatcata |
269 |
Q |
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| T |
46089992 |
cttttttagtttttgttctttgtagacttgatgcatgtttggaatcacggtaaatttaacaaaatcata |
46090060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 24009571 - 24009447
Alignment:
| Q |
3 |
ggtgaagttatgtatatgagagctaggtttgagagaattgttggctctagagattctgaagctttctatatgatgaatcctgatagcaatggtgctcctg |
102 |
Q |
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| T |
24009571 |
ggtgaacttatgtacatgagggcaaagtttgagagaattgttgggtctagagactctgaagctttctatatgatgaatcctgatagcaatggtgttcctg |
24009472 |
T |
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| Q |
103 |
agcttagtgtttatttgcttagagt |
127 |
Q |
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| T |
24009471 |
agcttagtatttatttgcttagagt |
24009447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 23227114 - 23227233
Alignment:
| Q |
12 |
atgtatatgagagctaggtttgagagaattgttggctctagagattctgaagctttctatatgatgaatcctgatagcaatggtgctcctgagcttagtg |
111 |
Q |
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|||||||||||||||| || |||||| || |||| |||| |||||||||||||||||| |||||||| | || | | | ||||| |||||| || || |
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| T |
23227114 |
atgtatatgagagctaagtatgagagggttattgggtctaaagattctgaagctttctacatgatgaaccatgttggtagtggtggtcctgaactcagcc |
23227213 |
T |
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| Q |
112 |
tttatttgcttagagtttaa |
131 |
Q |
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|||| ||||||||||||||| |
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| T |
23227214 |
tttacttgcttagagtttaa |
23227233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 46613567 - 46613495
Alignment:
| Q |
15 |
tatatgagagctaggtttgagagaattgttggctctagagattctgaagctttctatatgatgaatcctgata |
87 |
Q |
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|||||||||| ||| ||||| ||| | |||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
46613567 |
tatatgagaggtagatttgaaagagtaattggttctaaggattctgaagctttttatatgattaatcctgata |
46613495 |
T |
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