View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5823-5 (Length: 211)
Name: Solexa-NF5823-5
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5823-5 |
 | |
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| [»] chr2 (7 HSPs) |
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| [»] chr6 (7 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0713 (1 HSPs) |
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| [»] scaffold0406 (1 HSPs) |
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| [»] scaffold2168 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 45330728 - 45330931
Alignment:
| Q |
8 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45330728 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
45330827 |
T |
|
| Q |
108 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
45330828 |
attagtaatgctcagatacgatgtcggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgaattgatgac |
45330927 |
T |
|
| Q |
208 |
gatc |
211 |
Q |
| |
|
|||| |
|
|
| T |
45330928 |
gatc |
45330931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 31713040 - 31713243
Alignment:
| Q |
8 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
107 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31713040 |
tatatgttatcaataatgcgataacacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
31713139 |
T |
|
| Q |
108 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |
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|
| T |
31713140 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaactgtgagttggtgac |
31713239 |
T |
|
| Q |
208 |
gatc |
211 |
Q |
| |
|
|||| |
|
|
| T |
31713240 |
gatc |
31713243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 39156069 - 39155866
Alignment:
| Q |
8 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
107 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39156069 |
tatatgttatcaataatgcaataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
39155970 |
T |
|
| Q |
108 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| || |
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|
| T |
39155969 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaactgtgagttgataac |
39155870 |
T |
|
| Q |
208 |
gatc |
211 |
Q |
| |
|
|||| |
|
|
| T |
39155869 |
gatc |
39155866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 10414748 - 10414840
Alignment:
| Q |
119 |
tcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
10414748 |
tcagagacgatgtcggacgcttcacatgcttctcccggggtgattggagagcacgcttagtcgattcgtcataactgtgagttgatgacgatc |
10414840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 2587112 - 2587190
Alignment:
| Q |
133 |
ggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| || |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2587112 |
ggacgcttcacatgcttctctaggagtggttggagatcaaacttagttgattcgtcataactgtgagttgatgacgatc |
2587190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 44314724 - 44314854
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
179 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
44314724 |
gaatgagtttctaattcataagaaaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
44314822 |
T |
|
| Q |
180 |
cgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44314823 |
tgattcgtcgtaactgtgagttgatgacgatc |
44314854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 44322903 - 44323033
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
179 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
44322903 |
gaatgagtttctaattcataagaaaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
44323001 |
T |
|
| Q |
180 |
cgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44323002 |
tgattcgtcgtaactgtgagttgatgacgatc |
44323033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 27683190 - 27683393
Alignment:
| Q |
8 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27683190 |
tatatgttatcaataatgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
27683289 |
T |
|
| Q |
108 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
27683290 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaacagtgagttgatgac |
27683389 |
T |
|
| Q |
208 |
gatc |
211 |
Q |
| |
|
|||| |
|
|
| T |
27683390 |
gatc |
27683393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 27690511 - 27690714
Alignment:
| Q |
8 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27690511 |
tatatgttatcaataatgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
27690610 |
T |
|
| Q |
108 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
27690611 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaacagtgagttgatgac |
27690710 |
T |
|
| Q |
208 |
gatc |
211 |
Q |
| |
|
|||| |
|
|
| T |
27690711 |
gatc |
27690714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 17354576 - 17354779
Alignment:
| Q |
8 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17354576 |
tatatgttatcaataatgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
17354675 |
T |
|
| Q |
108 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||| || |
|
|
| T |
17354676 |
attattaatgctcagatacgatgccggatgcttcacatgcttctcccgggatggttggagagcactcttagttgattcttcgtaactgtgagttgattac |
17354775 |
T |
|
| Q |
208 |
gatc |
211 |
Q |
| |
|
|||| |
|
|
| T |
17354776 |
gatc |
17354779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 13143245 - 13143042
Alignment:
| Q |
8 |
tatatgttatcaatactgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctggaatgagtttctaatatatgtgaaaac |
107 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13143245 |
tatatgttatcgataatgcgataatacatattcaacttgcatttcatggtcatctagtgctactaaagttctgaaatgagtttctaatatatgtgaaaac |
13143146 |
T |
|
| Q |
108 |
attagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgac |
207 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
13143145 |
attattaatgttcagatacgatgccagacgcttcacatgcttctcccaggatggttggagagcacgcttagttgattcgtcgtaacagtgagttgatgac |
13143046 |
T |
|
| Q |
208 |
gatc |
211 |
Q |
| |
|
|||| |
|
|
| T |
13143045 |
gatc |
13143042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 22012797 - 22012927
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
179 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
22012797 |
gaatgagtttctaattcataagaaaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
22012895 |
T |
|
| Q |
180 |
cgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22012896 |
tgattcgtcgtaactgtgagttgatgacgatc |
22012927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 25479517 - 25479446
Alignment:
| Q |
133 |
ggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgat |
204 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| || |||||| |||||||| ||||||||||||||| |
|
|
| T |
25479517 |
ggacgcttcacatgcttctcttggagtggttggagatcaaacttagttgattcgtcataactgtgagttgat |
25479446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 27526076 - 27526206
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
179 |
Q |
| |
|
||||||||||||||| ||| || || |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
27526076 |
gaatgagtttctaattcatgagagaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
27526174 |
T |
|
| Q |
180 |
cgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
27526175 |
tgatttgtcgtaactgtgagttgatgacgatc |
27526206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 29290328 - 29290238
Alignment:
| Q |
121 |
agatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | || || |||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29290328 |
agatacaatgccggacgcttcacatgcttctcccagggtgattggagagttcgcttagtcgattcgtcataactgtgagttgatgacgatc |
29290238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 14649114 - 14649244
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
179 |
Q |
| |
|
||||||||||||||| ||| || || |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
14649114 |
gaatgagtttctaattcatgagagaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
14649212 |
T |
|
| Q |
180 |
cgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14649213 |
tgattcgtcgtaactgtgagttgatgacgatc |
14649244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 14658904 - 14659034
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
179 |
Q |
| |
|
||||||||||||||| ||| || || |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
14658904 |
gaatgagtttctaattcatgagagaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
14659002 |
T |
|
| Q |
180 |
cgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14659003 |
tgattcgtcgtaactgtgagttgatgacgatc |
14659034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 16099656 - 16099745
Alignment:
| Q |
115 |
atgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgat |
204 |
Q |
| |
|
||||||||||| | | |||| |||||||||||||||| | | || ||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
16099656 |
atgctcagatatggcgtcggatgcttcacatgcttctccctgagtgattggagagcacacttagttgattcgtcataactgtgagttgat |
16099745 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 17654678 - 17654588
Alignment:
| Q |
121 |
agatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
17654678 |
agatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagttgattcgtcgtaactgtgagttgataacgatc |
17654588 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 28802420 - 28802550
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtc |
180 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| | ||||||||||| || |||||||||||||||||||||| | || ||||| ||||||| ||||| |
|
|
| T |
28802420 |
gaatgagtttctaattcatgagaaaatattattgatgctcagatatgacgccggacgcttcacatgcttctttaggagtggttagagagcaaacttagct |
28802519 |
T |
|
| Q |
181 |
gattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |
|
|
| T |
28802520 |
gattcgtcataacagtgagttgatgacgatc |
28802550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 6023471 - 6023419
Alignment:
| Q |
159 |
tggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6023471 |
tggttggagaacatacttagttgattcgtcgtaactgtgagttgatgacgatc |
6023419 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 34378226 - 34378296
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttct |
151 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| | ||||||||||| || | |||||||||||||||||||| |
|
|
| T |
34378226 |
gaatgagtttctaattcatgagaaaatattattgatgctcagatatgacgacggacgcttcacatgcttct |
34378296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 11513941 - 11513845
Alignment:
| Q |
115 |
atgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||| || |||||||||||||| |||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
11513941 |
atgctcagatatggcgccggatgcttcacatgcttcttcatgggtggttggagagcacacttagttgattcgttgtaattgtgagttgatgacgatc |
11513845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 54353107 - 54353030
Alignment:
| Q |
132 |
cggacgcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||||||||||| ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
54353107 |
cggatgcttcacatgcttctcccggagtgattggagagcacaattagttgattcgtc--aactgtgagttgatgacgatc |
54353030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 5520775 - 5520645
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcgggatggttggagagcacgcttagtc |
180 |
Q |
| |
|
|||||| |||||||| ||| ||||| |||| | |||| ||||| || ||||| ||||||||||||||| |||| ||||| ||||||| |||||| |
|
|
| T |
5520775 |
gaatgattttctaattcatgagaaaatattattggtgcttagatatgacgccgggcgcttcacatgcttccttcggagtggttagagagcaaacttagtt |
5520676 |
T |
|
| Q |
181 |
gattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||| || |||||||||||||||||||||| |
|
|
| T |
5520675 |
gattcatcataactgtgagttgatgacgatc |
5520645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 3945 - 4075
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctctcggga-tggttggagagcacgcttagt |
179 |
Q |
| |
|
||||||||||||||| ||| || || |||| | ||| ||||||| || ||| |||||||||||||||||| || ||| ||||| ||| ||| | |||| |
|
|
| T |
3945 |
gaatgagtttctaattcatgagagaatattattgatgttcagatatgacgccagacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagt |
4043 |
T |
|
| Q |
180 |
cgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| |
|
|
| T |
4044 |
tgattcgtcgtaactatgagttgataacgatc |
4075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 2548 - 2622
Alignment:
| Q |
137 |
gcttcacatgcttctctcgggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||||||| || |||||||||| || | |||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
2548 |
gcttcacatgcttctctaggagtggttggagatcaaacatagttgattcgtcataactgtgagttgataacgatc |
2622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 5735628 - 5735558
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttct |
151 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| | ||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
5735628 |
gaatgagtttctaattcatgagaaaatattattgatgttcagatatgacgccggacgcttcacatgcttct |
5735558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 5772740 - 5772670
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttct |
151 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| | ||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
5772740 |
gaatgagtttctaattcatgagaaaatattattgatgttcagatatgacgccggacgcttcacatgcttct |
5772670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 28059566 - 28059511
Alignment:
| Q |
156 |
ggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||| || | ||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
28059566 |
ggatggttggagaacaagtttagttgattcgtcgtatcggtgagttgatgacgatc |
28059511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 28069991 - 28069936
Alignment:
| Q |
156 |
ggatggttggagagcacgcttagtcgattcgtcgtaactgtgagttgatgacgatc |
211 |
Q |
| |
|
||||||||||||| || | ||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
28069991 |
ggatggttggagaacaagtttagttgattcgtcgtatcggtgagttgatgacgatc |
28069936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2168
Description:
Target: scaffold2168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 25 - 97
Alignment:
| Q |
81 |
gaatgagtttctaatatatgtgaaaacattagtaatgctcagatacgatgccggacgcttcacatgcttctct |
153 |
Q |
| |
|
||||||||||||||| || ||||| |||| | ||| ||||||| || ||| |||||||||||||||||||| |
|
|
| T |
25 |
gaatgagtttctaattcataagaaaatattattgatgttcagatatgacgccagacgcttcacatgcttctct |
97 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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