View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5823-6 (Length: 201)
Name: Solexa-NF5823-6
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5823-6 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 34140270 - 34140077
Alignment:
| Q |
8 |
caaaggtagattaacttttaaactaatgggttgtttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagct |
107 |
Q |
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| T |
34140270 |
caaaggtagattaacttttaaactaatgggttgtttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagct |
34140171 |
T |
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| Q |
108 |
ggcccgtaagttattggagcttatagctttaagcttaggacttgaagcaaagaggtttgaagaattctacaaggatcaaactagctttataaga |
201 |
Q |
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| T |
34140170 |
ggcccgtaagttattggagcttatagctttaagcttaggacttgaagcaaagaggtttgaagaattcttcaagtatcaaactagctttataaga |
34140077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 34131398 - 34131232
Alignment:
| Q |
31 |
taatgggttgtttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagctta |
130 |
Q |
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| T |
34131398 |
taatgggttgtgtttaaaattgatgtctacatgagcagggctatacttgaagagtatattcaagaggtggaaaagctggcatataggttgctggagctaa |
34131299 |
T |
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| Q |
131 |
tagctttaagcttaggacttgaagcaaagaggtttgaagaattctacaaggatcaaactagctttat |
197 |
Q |
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| T |
34131298 |
tagctctaagcttaggacttgaagcaaagaggtttgaagaattcttcaagtatcaaactagctttat |
34131232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 43 - 192
Target Start/End: Complemental strand, 34126244 - 34126095
Alignment:
| Q |
43 |
tttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaagct |
142 |
Q |
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| T |
34126244 |
tttaaaattaatgtcaacatgagcaggaatataattgaagagtatattaaggagatggaaaatttggcctctaagttgctggagttaatagctttgagct |
34126145 |
T |
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| Q |
143 |
taggacttgaagcaaagaggtttgaagaattctacaaggatcaaactagc |
192 |
Q |
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| T |
34126144 |
tagggcttgaagcaatgaggtttgaagaattcttcaaggatacaactagc |
34126095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 34137079 - 34136923
Alignment:
| Q |
41 |
tttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaag |
140 |
Q |
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| T |
34137079 |
tttttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgag |
34136980 |
T |
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| Q |
141 |
cttaggacttgaagcaaagaggtttgaagaattctacaaggatcaaactagctttat |
197 |
Q |
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| T |
34136979 |
cttaggagttgaagcaaagaggtttgaagagttcttcaaagatcacactagctttat |
34136923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 34142860 - 34142729
Alignment:
| Q |
67 |
agagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaagcttaggacttgaagcaaagaggtttg |
166 |
Q |
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| T |
34142860 |
agagttattcttaaagagtatattaaagagatggaaaagctagcctttacgttgctagagctcatagctcttagcttaggagttgaagcaaagaggtttg |
34142761 |
T |
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| Q |
167 |
aagaattct---acaaggatcaaactagcttt |
195 |
Q |
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| T |
34142760 |
aagaattcttcatcaaagatcaaactagcttt |
34142729 |
T |
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