View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5823-9 (Length: 176)
Name: Solexa-NF5823-9
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5823-9 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 8e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 8e-72
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 30390957 - 30390797
Alignment:
| Q |
8 |
tcaactgtaagatccttgctagacagatgggatgcatccgttctcatactcctcgagagggaaatatggtggctgatgtccttgctaagaatgggcaagg |
107 |
Q |
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| T |
30390957 |
tcaactataagatccttgctagacagatggaatgcatctgttctcatactcctcgagagggaaatatggtggctgatgtccttgctaagaatgggcaagg |
30390858 |
T |
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| Q |
108 |
gctttctatgtactcttctcaatggtgggactctccacctgcgtttgctttacctatgcta |
168 |
Q |
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| T |
30390857 |
tctttctatgtactcttctcaacggtgggactctccacccgcgtttgctttacctatgcta |
30390797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 14867939 - 14867874
Alignment:
| Q |
70 |
aatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
135 |
Q |
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| T |
14867939 |
aatatggttgttgatgcccttgctaagaatggtcaaggtcttgctatgttctcctctcaatggtgg |
14867874 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 17013572 - 17013637
Alignment:
| Q |
70 |
aatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
135 |
Q |
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| T |
17013572 |
aatatggctgctgatgcccttgctaagaatggtcaaggtcttgctatgttctcctctcaatggtgg |
17013637 |
T |
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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 71914 - 71968
Alignment:
| Q |
81 |
tgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
135 |
Q |
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| T |
71914 |
tgatgcccttgctaagaatggtcaaggtcttgctatgttctcctctcaatggtgg |
71968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 20267729 - 20267794
Alignment:
| Q |
70 |
aatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
135 |
Q |
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| T |
20267729 |
aatatggctgctgatgcccttgctaagaatggtcaaggtcttgctatgttctcctttcaatggtgg |
20267794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 14236746 - 14236681
Alignment:
| Q |
70 |
aatatggtggctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgg |
135 |
Q |
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| T |
14236746 |
aatatggctgctgatgcccttgctaagaatggtcaaggtcttgctatgttctcctttcaatggtgg |
14236681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 52904541 - 52904602
Alignment:
| Q |
79 |
gctgatgtccttgctaagaatgggcaagggctttctatgtactcttctcaatggtgggactc |
140 |
Q |
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| T |
52904541 |
gctgatgcccttgctaagaatgggcaaggcctagctttttactcttatcagtggtgggactc |
52904602 |
T |
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