View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5824-20 (Length: 131)
Name: Solexa-NF5824-20
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5824-20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 3859551 - 3859425
Alignment:
| Q |
7 |
atggttgtctatttatctacatcaacatgtcatttactcttcacttaataccaactcagattcatgattctct--nnnnnnnctgacatttttatacggt |
104 |
Q |
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| T |
3859551 |
atggttgtctatttatctccatcaacatgtcatttactcttcacttaataccaactcagattcatgattctctaaaaaaaaactgacatttttatacggt |
3859452 |
T |
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| Q |
105 |
agacaaaatatttcctctattatgatg |
131 |
Q |
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| T |
3859451 |
agacaaaatatttcctctattatgatg |
3859425 |
T |
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