View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5824-23 (Length: 129)
Name: Solexa-NF5824-23
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5824-23 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 10971965 - 10972093
Alignment:
| Q |
1 |
caacataccgatgcaaagtggttaacatcgcgatgatgtgcttcatcagctctgacaacctctacaacatcccttaaagtagagttttggggaagctgcc |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10971965 |
caacataccgaagcaaaatggttaacatcgcgatgatgtgcttcatcagctctgacaacctctacaacatcccttaaagtagagttttggggaagctgcc |
10972064 |
T |
|
| Q |
101 |
aatagtcaatagcaatagctggagcagga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10972065 |
aatagtcaatagcaatagctggagcagga |
10972093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University