View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5824-31 (Length: 124)

Name: Solexa-NF5824-31
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5824-31
Solexa-NF5824-31
[»] chr5 (2 HSPs)
chr5 (8-124)||(1759366-1759479)
chr5 (62-122)||(1754206-1754265)
[»] chr4 (22 HSPs)
chr4 (55-124)||(27480015-27480084)
chr4 (56-124)||(27474006-27474074)
chr4 (53-124)||(27513731-27513802)
chr4 (55-124)||(27505659-27505728)
chr4 (33-124)||(27487097-27487188)
chr4 (55-124)||(27460592-27460661)
chr4 (55-124)||(27502092-27502161)
chr4 (55-124)||(27523360-27523429)
chr4 (55-120)||(27526069-27526134)
chr4 (68-124)||(27444764-27444820)
chr4 (56-124)||(27466935-27467003)
chr4 (56-124)||(27516567-27516635)
chr4 (55-124)||(27469574-27469643)
chr4 (57-124)||(27567369-27567436)
chr4 (70-124)||(27557603-27557657)
chr4 (55-124)||(27476801-27476870)
chr4 (68-124)||(27498529-27498585)
chr4 (68-119)||(27431118-27431169)
chr4 (55-124)||(27500295-27500364)
chr4 (68-120)||(27554427-27554479)
chr4 (69-120)||(27501435-27501486)
chr4 (91-124)||(27495650-27495683)
[»] chr3 (3 HSPs)
chr3 (68-124)||(50904762-50904818)
chr3 (64-124)||(38028732-38028792)
chr3 (64-124)||(38040047-38040107)
[»] chr8 (1 HSPs)
chr8 (64-124)||(21604720-21604780)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 2e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 1759479 - 1759366
Alignment:
Q  8 taaagttgtacaaaaattggtcttttgatatcttcagagagctgctgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaat 107  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1759479 taaagttctacaaaaattggtcttttgatattttcagagagctg---attcaattcaagtgagaagtgatatctaagaaaacttcttctctgcaaagaat 1759383  T
Q  108 ggtgagaccacccattg 124  Q
    |||||||||||||||||    
T  1759382 ggtgagaccacccattg 1759366  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 1754206 - 1754265
Alignment:
Q  62 tcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccat 122  Q
    ||||| ||||||||||||||||||||| || |||||| ||| |||| ||||||||||||||    
T  1754206 tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccat 1754265  T

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Target: chr4 (Bit Score: 54; Significance: 2e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 27480084 - 27480015
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  27480084 attcaattcaagtgagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccattg 27480015  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 27474074 - 27474006
Alignment:
Q  56 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  27474074 ttcaattcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattg 27474006  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 27513731 - 27513802
Alignment:
Q  53 tgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||    
T  27513731 tgattcaattcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattg 27513802  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 27505659 - 27505728
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||| |||| ||||||||||||||||    
T  27505659 attcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagaccacccattg 27505728  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 27487188 - 27487097
Alignment:
Q  33 tgatatcttcagagagctgctgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||| ||| ||  | |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||| || |||||||||||||    
T  27487188 tgatatcttcaaagaactaataattcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccacccattg 27487097  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 27460661 - 27460592
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||| | |||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  27460661 attcaaattaagtgagaggtgatatccaagaaaatgtcttctctgcaaggaatggtgagaccacccattg 27460592  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 27502092 - 27502161
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||| |||| || |||||||||||||    
T  27502092 attcaatttaagtgagaggtgatatctaagaaaatgtcttctctgcaaggaatagttagaccacccattg 27502161  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 27523360 - 27523429
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||| || |||||||||||||    
T  27523360 attcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccacccattg 27523429  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 27526069 - 27526134
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccaccc 120  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||| |||| ||||||||||||    
T  27526069 attcaattcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccaccc 27526134  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 27444764 - 27444820
Alignment:
Q  68 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  27444764 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattg 27444820  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 27467003 - 27466935
Alignment:
Q  56 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||||||  ||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||    
T  27467003 ttcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattg 27466935  T

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Target: chr4; HSP #12
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 27516567 - 27516635
Alignment:
Q  56 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||| |||| |||||||| |||||||    
T  27516567 ttcaattcaagttagaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccattg 27516635  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 27469643 - 27469574
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||| |||||||| ||||||||||||||||  |||||||||||| |||| || |||||||||||||    
T  27469643 attcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattg 27469574  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 27567436 - 27567369
Alignment:
Q  57 tcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||||||||||||  ||||||||| | ||||| |||||| |||| ||||||||||||||||    
T  27567436 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacccattg 27567369  T

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Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 27557657 - 27557603
Alignment:
Q  70 gaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||||||||||||||| |||||||||||  |||| ||||||||||||||||    
T  27557657 gaagtgatatctaagaaaacatcttctctgcatggaatagtgagaccacccattg 27557603  T

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Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 27476870 - 27476801
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||| |||||||| || ||||| ||||||| ||||||||||||| |||| || |||||||||||||    
T  27476870 attcaatttaagtgagaggtaatatccaagaaaatgtcttctctgcaaggaatagttagaccacccattg 27476801  T

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Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 27498585 - 27498529
Alignment:
Q  68 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||||||||||| | |||||||| |||| |||| ||||||||||||||||    
T  27498585 gagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccattg 27498529  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 27431118 - 27431169
Alignment:
Q  68 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacc 119  Q
    ||||||| |||| |||||||||||||||||||||| |||| |||||||||||    
T  27431118 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacc 27431169  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 27500295 - 27500364
Alignment:
Q  55 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||||  ||||||||  |||||||||| ||||||||||||| |||| ||||  ||||||||||    
T  27500295 attcaattcaagcaagaagtgaattctaagaaaaggtcttctctgcaaggaatagtgatgccacccattg 27500364  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 27554479 - 27554427
Alignment:
Q  68 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccaccc 120  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||||||| ||||    
T  27554479 gagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagactaccc 27554427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 27501486 - 27501435
Alignment:
Q  69 agaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccaccc 120  Q
    |||||||||||||||||| | ||||||||| ||| |||| ||||||||||||    
T  27501486 agaagtgatatctaagaacatgtcttctctacaaggaatagtgagaccaccc 27501435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 27495683 - 27495650
Alignment:
Q  91 tcttctctgcaaagaatggtgagaccacccattg 124  Q
    |||||||||||| |||||||||||||||||||||    
T  27495683 tcttctctgcaaggaatggtgagaccacccattg 27495650  T

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Target: chr3 (Bit Score: 33; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 50904762 - 50904818
Alignment:
Q  68 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||||  || ||||| |||||||||||| |||||||||| ||||||||||    
T  50904762 gagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattg 50904818  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 38028732 - 38028792
Alignment:
Q  64 aagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||| ||||| || |||||||    
T  38028732 aagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattg 38028792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 38040047 - 38040107
Alignment:
Q  64 aagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||| ||||| || |||||||    
T  38040047 aagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattg 38040107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 21604720 - 21604780
Alignment:
Q  64 aagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattg 124  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||| ||||| || |||||||    
T  21604720 aagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattg 21604780  T

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