View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5824-4 (Length: 167)
Name: Solexa-NF5824-4
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5824-4 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 8e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 8e-78
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 5079595 - 5079741
Alignment:
| Q |
8 |
gatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatcc |
107 |
Q |
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| T |
5079595 |
gatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatcc |
5079694 |
T |
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| Q |
108 |
aagttttcaaggttaattcttctgcaaacatttcatctgttggcttc |
154 |
Q |
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| T |
5079695 |
aagttttcaaggttaattcttctgcaaacatttcatctgttggcttc |
5079741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 5120305 - 5120177
Alignment:
| Q |
26 |
tcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaatt |
125 |
Q |
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| T |
5120305 |
tcatgaatttctttctcatgttgtgagcctaaattgtaatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaatt |
5120206 |
T |
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| Q |
126 |
cttctgcaaacatttcatctgttggcttc |
154 |
Q |
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| T |
5120205 |
cttctgaaaacatttcatttgttggcttc |
5120177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 5102680 - 5102555
Alignment:
| Q |
26 |
tcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaatt |
125 |
Q |
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| T |
5102680 |
tcatgaatttctttctcatgttgtgagcctaaattgtaatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaatt |
5102581 |
T |
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| Q |
126 |
cttctgcaaacatttcatctgttggc |
151 |
Q |
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|||||| ||||||||||| ||||||| |
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| T |
5102580 |
cttctgaaaacatttcatttgttggc |
5102555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 5e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 16886959 - 16886813
Alignment:
| Q |
8 |
gatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatcc |
107 |
Q |
| |
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|||||||| | || || ||||||| |||| ||||| || ||||||||||| || ||||||||||||||||||||||||| | ||||| |||||||||| |
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| T |
16886959 |
gatacatgtgatacaatttcatgagtttcattcccttgttgtgagactaaattgtaatccacaacttccataactgaattaggcattgactcactaatcc |
16886860 |
T |
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| Q |
108 |
aagttttcaaggttaattcttctgcaaacatttcatctgttggcttc |
154 |
Q |
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| T |
16886859 |
atgtttttaaggttaattcttgtacaaacatttcatttgttggcttc |
16886813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 14411825 - 14411948
Alignment:
| Q |
31 |
aatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttct |
130 |
Q |
| |
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||||||||||||||| || ||| ||| || ||||||||||||||||| |||||| || ||||| ||||||||||||||||| |||||||||||| |
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| T |
14411825 |
aatttctttcccatgttgcgagtctagattgtaatccacaacttccatactcgaattggccatcgattcgctaatccaagttttcaaagttaattcttct |
14411924 |
T |
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| Q |
131 |
gcaaacatttcatctgttggcttc |
154 |
Q |
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| T |
14411925 |
gaaaacatttcatttgttggcttc |
14411948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 25714975 - 25715076
Alignment:
| Q |
52 |
gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc |
151 |
Q |
| |
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|||||| |||||||||| || ||||||| |||||| | | ||||||||| ||||| || |||||| ||| |||| | ||||||| |||||||||||| |
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| T |
25714975 |
gactaaatttgaatccatgacctccataattgaattaggcaatgattcactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc |
25715074 |
T |
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| Q |
152 |
tt |
153 |
Q |
| |
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|| |
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| T |
25715075 |
tt |
25715076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 22901376 - 22901317
Alignment:
| Q |
94 |
tgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggctt |
153 |
Q |
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||||||||| ||||| || ||||| |||| |||||| ||||||| |||||||||||||| |
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| T |
22901376 |
tgattcactgatccatgtcttcaaagttaggtcttctacaaacatatcatctgttggctt |
22901317 |
T |
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