View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5824-43 (Length: 75)

Name: Solexa-NF5824-43
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5824-43
Solexa-NF5824-43
[»] chr1 (3 HSPs)
chr1 (8-75)||(3349277-3349344)
chr1 (10-75)||(3340405-3340470)
chr1 (10-75)||(2948536-2948601)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 3349277 - 3349344
Alignment:
Q  8 ctatgtgtatctactgaaacttccctaaaaccttcagttattgagagcaagtttttgagaattgttga 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3349277 ctatgtgtatctactgaaacttccctaaaaccttcagttattgagagcaagtttttgagaattattga 3349344  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 3340405 - 3340470
Alignment:
Q  10 atgtgtatctactgaaacttccctaaaaccttcagttattgagagcaagtttttgagaattgttga 75  Q
    ||||||||||||||||||||||  | | |||||||||||||||||||||||||| |||||||||||    
T  3340405 atgtgtatctactgaaacttccaaacacccttcagttattgagagcaagtttttaagaattgttga 3340470  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 2948601 - 2948536
Alignment:
Q  10 atgtgtatctactgaaacttccctaaaaccttcagttattgagagcaagtttttgagaattgttga 75  Q
    |||||||||||||| || ||||  | | ||||||||||||||||||||||||||||||||||||||    
T  2948601 atgtgtatctactgcaatttccaaagacccttcagttattgagagcaagtttttgagaattgttga 2948536  T

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