View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5824-5 (Length: 167)
Name: Solexa-NF5824-5
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5824-5 |
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Alignment Details
Target: chr2 (Bit Score: 65; Significance: 7e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 198928 - 199013
Alignment:
| Q |
74 |
agtttccgtcttaagatatcacactnnnnnnncatacatttcatagttaatttagcaagacatattggatcatttctttatttatt |
159 |
Q |
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| T |
198928 |
agtttccgtcttaagatatcacactaaaaaaacatacatttcatagttaatttagcaagacatattggatcatttctttatttatt |
199013 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 198866 - 198907
Alignment:
| Q |
12 |
aatgattgatcaa-taattaacaatactcttgtttccctatt |
52 |
Q |
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| T |
198866 |
aatgattgatcaaataattaacaatactcttgtttccctatt |
198907 |
T |
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