View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5824-6 (Length: 166)

Name: Solexa-NF5824-6
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5824-6
Solexa-NF5824-6
[»] chr6 (3 HSPs)
chr6 (1-163)||(26615892-26616053)
chr6 (1-163)||(26721820-26721981)
chr6 (1-114)||(16856604-16856716)
[»] chr4 (3 HSPs)
chr4 (1-114)||(43942830-43942942)
chr4 (35-114)||(22073963-22074042)
chr4 (112-160)||(22073891-22073939)
[»] chr3 (1 HSPs)
chr3 (1-114)||(5884995-5885107)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-114)||(10741-10853)
[»] chr1 (1 HSPs)
chr1 (112-161)||(51167539-51167588)
[»] chr2 (1 HSPs)
chr2 (116-163)||(653442-653490)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 5e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26615892 - 26616053
Alignment:
Q  1 gagatgaagagttaaagtcgagtgagaagaacaataatacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaat 100  Q
    |||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  26615892 gagatgaagagttaaaat-gagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaacccaaaat 26615990  T
Q  101 ttggtgcccaaaatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatcatat 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26615991 ttggtgcccaaaatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatcatat 26616053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26721820 - 26721981
Alignment:
Q  1 gagatgaagagttaaagtcgagtgagaagaacaataatacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaat 100  Q
    |||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  26721820 gagatgaagagttaaaat-gagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaacccaaaat 26721918  T
Q  101 ttggtgcccaaaatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatcatat 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26721919 ttggtgcccaaaatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatcatat 26721981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 16856716 - 16856604
Alignment:
Q  1 gagatgaagagttaaagtcgagtgagaagaacaataatacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaat 100  Q
    |||||||||||||||| | |||||  || || | |||||||| ||||||||||| |||| ||||||||  ||||||| ||||| ||||||||||||||||    
T  16856716 gagatgaagagttaaaat-gagtggaaaaaaaagtaatacaatattgaagatgaactaaccaattgttgcttgaatgcggtgatgaacaaaacccaaaat 16856618  T
Q  101 ttggtgcccaaaat 114  Q
    ||||||||||||||    
T  16856617 ttggtgcccaaaat 16856604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 43942942 - 43942830
Alignment:
Q  1 gagatgaagagttaaagtcgagtgagaagaacaataatacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaat 100  Q
    |||||||||||||||| | |||||  || |||| |||||||| ||||||||||| |||| ||||||||  ||||||||||||| ||||||||||||||||    
T  43942942 gagatgaagagttaaaat-gagtggaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaat 43942844  T
Q  101 ttggtgcccaaaat 114  Q
    ||||||| ||||||    
T  43942843 ttggtgcacaaaat 43942830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 22074042 - 22073963
Alignment:
Q  35 taatacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaat 114  Q
    |||| |||||||||||||||  ||  ||||||||  ||||| ||||||| ||||||||||||||||||||||| ||||||    
T  22074042 taattcaaaattgaagatgaattatacaattgttgtttgaaagtggtgatgaacaaaacccaaaatttggtgcgcaaaat 22073963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 22073939 - 22073891
Alignment:
Q  112 aatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatca 160  Q
    |||||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  22073939 aatgtaagacaaatagtcacatcaatagaaactaaaaatattgagatca 22073891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 5884995 - 5885107
Alignment:
Q  1 gagatgaagagttaaagtcgagtgagaagaacaataatacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaat 100  Q
    |||||||||||||||| | |||||  || |||| |||||||| ||||||||||| |||| ||||||||  ||||||||||||| ||||||||||||||||    
T  5884995 gagatgaagagttaaaat-gagtggaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaat 5885093  T
Q  101 ttggtgcccaaaat 114  Q
    ||||||| ||||||    
T  5885094 ttggtgcacaaaat 5885107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 50; Significance: 6e-20; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10741 - 10853
Alignment:
Q  1 gagatgaagagttaaagtcgagtgagaagaacaataatacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaat 100  Q
    |||||||| ||||||| | |||||  || |||| ||| |||| ||||||||||| |||| ||||||||  ||||||||||||| ||||||||||||||||    
T  10741 gagatgaaaagttaaaat-gagtggaaaaaacagtaagacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaat 10839  T
Q  101 ttggtgcccaaaat 114  Q
    ||||||| ||||||    
T  10840 ttggtgcacaaaat 10853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 51167539 - 51167588
Alignment:
Q  112 aatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatcat 161  Q
    |||||||||||||||||||| | |||||||| |||| |||| ||||||||    
T  51167539 aatgtaggacaaatagtctccttagtagaaactaaatatattgagatcat 51167588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 653442 - 653490
Alignment:
Q  116 taggacaaatagtctcatcagtagaaa-ttaaaaatatagagatcatat 163  Q
    |||||||||||||||||||||||||||   |||||||| ||||||||||    
T  653442 taggacaaatagtctcatcagtagaaacaaaaaaatatggagatcatat 653490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University