View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5824-7 (Length: 148)
Name: Solexa-NF5824-7
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5824-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 6e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 40838899 - 40838759
Alignment:
| Q |
8 |
taaacattatagggtggggaacattgttacctatgggagtaataattccaagatactttcgagtgtatccttttaaaaaggatccatggtggtttcactt |
107 |
Q |
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| T |
40838899 |
taaacattatagggtggggaacgttgttacctatgggagtaataattccaagatactttcgagtgtatccttttcacaaggatccatggtggttttactt |
40838800 |
T |
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| Q |
108 |
gcacattggttgccaaacaactggttttctctttgttactg |
148 |
Q |
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| T |
40838799 |
gcacattggttgccaaacaactggttttctcattggtactg |
40838759 |
T |
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