View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5824-9 (Length: 144)
Name: Solexa-NF5824-9
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5824-9 |
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| [»] chr5 (5 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 4e-33; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 1758676 - 1758747
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
144 |
Q |
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| T |
1758676 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
1758747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 29425844 - 29425915
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
144 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
29425844 |
ctcttttgttgctgatgatgaaaaagtcatatctcaggtacatgtcttgaatattcagctgtgattgtcttt |
29425915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 27919187 - 27919258
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
144 |
Q |
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||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |
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| T |
27919187 |
ctcttttattactgaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcgactgtgattgacttt |
27919258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 29168743 - 29168814
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
144 |
Q |
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| T |
29168743 |
ctctcttgttgctgaagatgaaaatgtcatatctcaggtatatgtcttgaatcttcgactgtgattgtcttt |
29168814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 29567930 - 29567859
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
144 |
Q |
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| T |
29567930 |
ctctcttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgactgtcttt |
29567859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 18986615 - 18986686
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
144 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18986615 |
ctcttttgttgctaaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcaactgtgattgtcttt |
18986686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 27520901 - 27520830
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
144 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
27520901 |
ctcttttgttgctgaagatgaaaaagtcatatcgcaggtacatgtcttgaatcttcaactgtgattgtcttt |
27520830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 27482668 - 27482735
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgt |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||| |
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| T |
27482668 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtacatatcttgaatctttaacggtgattgt |
27482735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 27462594 - 27462660
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattg |
139 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
27462594 |
ctcttttgtttctgaagatgaaaaagtcatatctcaggtacatatcttgaatattcaactgtgattg |
27462660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 25519019 - 25519090
Alignment:
| Q |
73 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt |
144 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
25519019 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgattgtcttt |
25519090 |
T |
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