View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5825-10 (Length: 151)

Name: Solexa-NF5825-10
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5825-10
Solexa-NF5825-10
[»] chr4 (7 HSPs)
chr4 (1-151)||(38242951-38243101)
chr4 (1-146)||(38237976-38238120)
chr4 (1-131)||(38220096-38220226)
chr4 (1-149)||(38226437-38226584)
chr4 (1-149)||(38253304-38253451)
chr4 (26-132)||(38248176-38248281)
chr4 (6-136)||(38214063-38214192)
[»] chr6 (2 HSPs)
chr6 (1-147)||(17433454-17433600)
chr6 (1-137)||(17454533-17454669)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 7e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 7e-78
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 38242951 - 38243101
Alignment:
Q  1 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38242951 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgata 38243050  T
Q  101 ctcaatctgaaacaaagaaatccatgttgctcactatgatacccaacaatg 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38243051 ctcaatctgaaacaaagaaatccatgttgctcactatgatacccaacaatg 38243101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 38237976 - 38238120
Alignment:
Q  1 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgata 100  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| |||||||||||||||||||||||||| ||||    
T  38237976 agatcatatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgata 38238075  T
Q  101 ctcaatctgaaacaaagaaatccatgttgctcactatgatacccaa 146  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||||    
T  38238076 ctcattctgaaacaaagaaaaccatgttgctcactat-atacccaa 38238120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 38220096 - 38220226
Alignment:
Q  1 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgata 100  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||| |||||| |||| |||| ||||||||| ||||    
T  38220096 agatcacataaccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 38220195  T
Q  101 ctcaatctgaaacaaagaaatccatgttgct 131  Q
    ||||| ||||||||||||||||||| |||||    
T  38220196 ctcaacctgaaacaaagaaatccatattgct 38220226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 38226437 - 38226584
Alignment:
Q  1 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgata 100  Q
    |||||||||| ||||||||||| | ||||||||||||||||||||||| |||||| ||||||   ||  |||||||||||| ||||||||||||| ||||    
T  38226437 agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata 38226536  T
Q  101 ctcaatctgaaacaaagaaatccatgttgctcactatgatacccaacaa 149  Q
    |||| ||||||||||| |||| ||||||||||||||| |||||||||||    
T  38226537 ctcagtctgaaacaaataaattcatgttgctcactat-atacccaacaa 38226584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 38253304 - 38253451
Alignment:
Q  1 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgata 100  Q
    |||||||||| ||||| ||||| | ||||||||||||||| || |||||||||||||||||| ||||| | || ||| |||||||||||| ||||  |||    
T  38253304 agatcacatagccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcata 38253403  T
Q  101 ctcaatctgaaacaaagaaatccatgttgctcactatgatacccaacaa 149  Q
    ||||| |||||||||||||||| ||||||||| | || |||||||||||    
T  38253404 ctcaacctgaaacaaagaaatctatgttgctcgc-attatacccaacaa 38253451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 38248176 - 38248281
Alignment:
Q  26 tgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgatactcaatctgaaacaaagaaatccat 125  Q
    ||||||||||||||| ||||||||||||||||||||| |||||   || ||||||||||||||||||||| ||||||||| |||||||||||||||| |     
T  38248176 tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaact-gatactcaacctgaaacaaagaaatctac 38248274  T
Q  126 gttgctc 132  Q
    |||||||    
T  38248275 gttgctc 38248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 38214063 - 38214192
Alignment:
Q  6 acatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgatactcaa 105  Q
    ||||| ||||||||||| | |||||||||||||||| ||||||||||||| ||||||  |    |||| |||||| | |||||||||||| |||||||||    
T  38214063 acatagccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaa 38214162  T
Q  106 tctgaaacaaagaaatccatgttgctcacta 136  Q
     |||||||||| |||||||||||||||||||    
T  38214163 cctgaaacaaa-aaatccatgttgctcacta 38214192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 9e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 17433454 - 17433600
Alignment:
Q  1 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgata 100  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||| ||||    
T  17433454 agatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaacttgata 17433553  T
Q  101 ctcaatctgaaacaaagaaatccatgttgctcactatgatacccaac 147  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  17433554 ctcaatctgaaacaaagaaatccatgttgctcactataatacccaac 17433600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 17454533 - 17454669
Alignment:
Q  1 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaactcgata 100  Q
    |||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||||| ||||    
T  17454533 agatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaacttgata 17454632  T
Q  101 ctcaatctgaaacaaagaaatccatgttgctcactat 137  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17454633 ctcaatctgaaacaaagaaattcatgttgctcactat 17454669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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