View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5825-19 (Length: 140)
Name: Solexa-NF5825-19
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5825-19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 9e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 42220285 - 42220408
Alignment:
| Q |
1 |
cataggcgatgatgcaatatatgacttacaattttaaaacctaaaccctcagactttgtctcctttagaatacaaatatttttttgtctttggtgtagaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42220285 |
cataggtgatgatgcaatatatgacttacaattttaaaacctaaaccctcagactttgtctcctttagaatacaaatatttttttgtctttggtgtagaa |
42220384 |
T |
|
| Q |
101 |
ccaacttaagtcttgttctgtata |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42220385 |
ccaacttaagtcttgttctgtata |
42220408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University