View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5825-2 (Length: 205)
Name: Solexa-NF5825-2
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5825-2 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 47250237 - 47250140
Alignment:
| Q |
9 |
cagaaactccaatgtaggaaaaaccctaacctcaagaattcagccacaaccattccttcccttgattccaatttgaataagccggttcataccaaaat |
106 |
Q |
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| T |
47250237 |
cagaaactccaatgtaggaaaaaccctaacctcaagaattcagccacaaccattccttcccttgattccaatttgaataagccggttcataccaaaat |
47250140 |
T |
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Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 49200517 - 49200437
Alignment:
| Q |
110 |
tgcttgagggtgaggtaatatctgaaagtagtgttggagaaaaggtatttataacgcatttatttctatcacctcagatgt |
190 |
Q |
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| T |
49200517 |
tgcttgaggatgaggtaatatccgaaagtagtgttggagaaaaagtatttataccgcatttatttctatcacctcagatgt |
49200437 |
T |
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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 9825435 - 9825502
Alignment:
| Q |
113 |
ttgagggtgaggtaatatctgaaagtagtgttggagaaaaggtatttataacgcatttatttctatca |
180 |
Q |
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| T |
9825435 |
ttgagggtgaggtaatatctggaagtagtgttggagaaaaaatatttataccgtctttatttctatca |
9825502 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 41863329 - 41863267
Alignment:
| Q |
110 |
tgcttgagggtgaggtaatatctgaaagtagtgttggagaaaaggtatttataacgcatttat |
172 |
Q |
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| T |
41863329 |
tgctagagggtaaggaaatatctggtagtagtgttggagaaaaaatatttatatcgcatttat |
41863267 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 24323198 - 24323116
Alignment:
| Q |
102 |
aaaatacatgcttgagggtgaggtaatatctgaaagtagtgttggagaaaaggtatttataacgcatttatttctatcacctc |
184 |
Q |
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| T |
24323198 |
aaaatacgtgctagagggtaaggtaatatttggtagtggtgttggagaaaaagtatttataccgcgtttatctctatcacctc |
24323116 |
T |
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