View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5825-24 (Length: 130)
Name: Solexa-NF5825-24
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5825-24 |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 2e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 20675443 - 20675565
Alignment:
| Q |
8 |
aagagaaattcttgattagaattgatatccttaattgtctccaagaagacaataaaatttatgtcttctctaattttccttttgattacatttctctcac |
107 |
Q |
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| T |
20675443 |
aagagaaattcttgattggaattgatatccttaattgtctccaagaagacaataaaatttatgtcttctctaattttccttttgattacatttctctcac |
20675542 |
T |
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| Q |
108 |
tactttcattaaactcattcatc |
130 |
Q |
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| T |
20675543 |
tgctttcattcaactcattcatc |
20675565 |
T |
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Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 20675083 - 20675196
Alignment:
| Q |
17 |
tcttgattagaattgatatccttaattgtctccaagaagacaataaaatttatgtcttctctaattttccttttgattacatttctctcactactttcat |
116 |
Q |
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| T |
20675083 |
tcttgatttgaattcatatatttaattgtctcaaagaagacaagaaaatttgtgtcttctctaattttccttttgattttatttctctcaatgctttcac |
20675182 |
T |
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| Q |
117 |
taaactcattcatc |
130 |
Q |
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| T |
20675183 |
tcaactcattcatc |
20675196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 19726824 - 19726883
Alignment:
| Q |
71 |
tcttctctaattttccttttgattacatttctctcactactttcattaaactcattcatc |
130 |
Q |
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| T |
19726824 |
tcttctctaattttccttttgattttattcctctcaatgctttcattcaactcatccatc |
19726883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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