View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5825-25 (Length: 127)
Name: Solexa-NF5825-25
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5825-25 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 1e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 13464929 - 13464812
Alignment:
| Q |
10 |
aataacaatcaaaattaaaacatgatctgtacgacttgactaatgatattaccattcacatatttcataaagaaactatagtggagaggtttctcatttt |
109 |
Q |
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| T |
13464929 |
aataacaatcaaaattaaaacatgatctgtacgacttgactaatgatattaccattcacatatttcataaagaaactatagtggagaggtttctcatttt |
13464830 |
T |
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| Q |
110 |
ttgtcacatcgaatattt |
127 |
Q |
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| T |
13464829 |
ttgtcacatcgaatattt |
13464812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 13478736 - 13478620
Alignment:
| Q |
13 |
aacaatcaaaattaaaacatgatctgtacgacttgactaatgatattaccattcacatatttcataaagaaactatag---tg-gagaggtttctcattt |
108 |
Q |
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||||| |||||| ||||||||||| ||| |||| |||||||| ||||||||||||||||||| |||||||||||||| || | ||||||||||||| |
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| T |
13478736 |
aacaaccaaaatgaaaacatgatcagtaaaacttaactaatgaaattaccattcacatatttcttaaagaaactatagctatgaaaaaggtttctcattt |
13478637 |
T |
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| Q |
109 |
tttgtcacatcgaatat |
125 |
Q |
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| T |
13478636 |
tttgtcacttcaaatat |
13478620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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