View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5825-28 (Length: 126)
Name: Solexa-NF5825-28
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5825-28 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 3e-61; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 38243589 - 38243471
Alignment:
| Q |
8 |
tctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctact |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38243589 |
tctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctact |
38243490 |
T |
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| Q |
108 |
taagatacactgttaaatg |
126 |
Q |
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||||||||||||||||||| |
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| T |
38243489 |
taagatacactgttaaatg |
38243471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 38238651 - 38238533
Alignment:
| Q |
8 |
tctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctact |
107 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38238651 |
tctattaggccagattataaaggaggtttgttatgttgttatgattctaaacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctact |
38238552 |
T |
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| Q |
108 |
taagatacactgttaaatg |
126 |
Q |
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| T |
38238551 |
taagatacactgttaaatg |
38238533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 38220738 - 38220623
Alignment:
| Q |
11 |
ataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctacttaa |
110 |
Q |
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|||||| |||||||||||||||||| |||||||||||||| | || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38220738 |
ataaggtcagattataaaggaggtttcttatgttgttatgactctaaacagtgcaagttgaaggaaggttttgagcgtccaaagagaagcctctacttaa |
38220639 |
T |
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| Q |
111 |
gatacactgttaaatg |
126 |
Q |
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| T |
38220638 |
gatacactgttaaatg |
38220623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 38227115 - 38227004
Alignment:
| Q |
15 |
ggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctacttaagata |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
38227115 |
ggccagattataaaggaggtttgttatgttgttatgaccatacacaatgcaagttgaaggaaggttttgagggtccaaagagaagtctctacctaagata |
38227016 |
T |
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| Q |
115 |
cactgttaaatg |
126 |
Q |
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|||||| ||||| |
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| T |
38227015 |
cactgtaaaatg |
38227004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 38253848 - 38253734
Alignment:
| Q |
12 |
taaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctacttaag |
111 |
Q |
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||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38253848 |
taaggcctgattataaaggaggtatgttatgttgttatgatcatacacggtgcaagttgaaggaaggttttgagggtccaaagagaaacctctacttaag |
38253749 |
T |
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| Q |
112 |
atacactgttaaatg |
126 |
Q |
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|||||| || ||||| |
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| T |
38253748 |
atacacagtgaaatg |
38253734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 38214699 - 38214581
Alignment:
| Q |
8 |
tctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctact |
107 |
Q |
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||||| ||| |||||||| ||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||| ||||| |
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| T |
38214699 |
tctattaggtcagattatgaaggaggtttgttatgttgttatgattatacacagtgtaaattgaaggaaggttttgaggggccaaagagaagtctctatc |
38214600 |
T |
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| Q |
108 |
taagatacactgttaaatg |
126 |
Q |
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||||||||||||| ||||| |
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| T |
38214599 |
taagatacactgtaaaatg |
38214581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 38248738 - 38248632
Alignment:
| Q |
7 |
atctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctctac |
106 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| || || || ||||||||||| ||| |
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| T |
38248738 |
atctattaggccagattataaaggaggtttgttatgttgttatgattctacacggtgcaagttgaaggaaggtttcgaaggacctaagagaagcctttac |
38248639 |
T |
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| Q |
107 |
ttaagat |
113 |
Q |
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||||||| |
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| T |
38248638 |
ttaagat |
38248632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 17455340 - 17455261
Alignment:
| Q |
20 |
gattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaag |
99 |
Q |
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| T |
17455340 |
gattataaaggaggtttgtcatgttgttatgataatacacaatgcaagttgaaggaaggttttaagggaccaaagagaag |
17455261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 17434241 - 17434155
Alignment:
| Q |
19 |
agattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaaagagaagcctcta |
105 |
Q |
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|||||||||||| ||| | ||||||| ||||| |||||| ||||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
17434241 |
agattataaagggggtatgaaatgttgtcatgataatacacaatgcaagttgaaggtaggttttgagggaccaaagagaagtctcta |
17434155 |
T |
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