View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5825-29 (Length: 192)
Name: Solexa-NF5825-29
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5825-29 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 8e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 8e-86
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 2695628 - 2695809
Alignment:
| Q |
11 |
gttcaaaatagtcattaacacaattctcaaaaccgaatcacaactkttgacatggtgagaagaacgtgttatgtctggaagtaggtcacttttgaaatgt |
110 |
Q |
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| T |
2695628 |
gttccaaatagtcattaacacaattttcaaaaccaaatcacaacttttgacatggtgagaagaacgtattatgtctggaagtaggtcacttttgaaatgt |
2695727 |
T |
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| Q |
111 |
ataaatttcttttcagtcaagttgtctagtggctaaatttttgccccttgaagtgaataagtaaaaaattgggagctcaatc |
192 |
Q |
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| T |
2695728 |
ataaatttcttttcagtcaagttgtctagtggctaaatttttgccccttgaagtgaataagtaagaaattgggagctcaatc |
2695809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 2695142 - 2695321
Alignment:
| Q |
11 |
gttcaaaatagtcattaacacaattctcaaaaccgaatcacaactkttgacatggtgagaagaacgtgttatgtctggaagtaggtcacttttgaaatgt |
110 |
Q |
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| T |
2695142 |
gttccaaatagtcattaacacaattttcaaaaccgaatcacaacttttgacatggtgagaagaacgaattatgtctggaagtaggtcacttttgaaatgt |
2695241 |
T |
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| Q |
111 |
ataaatttcttttcagtcaagttgtctagtggctaaatttttgccccttgaagtgaataagtaaaaaattgggagctcaa |
190 |
Q |
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| T |
2695242 |
ataaagattttttttgtcaagtttccaagtggctaaattttttccctttgaagtgattaagtcaaaaattaggagctcaa |
2695321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 2694667 - 2694840
Alignment:
| Q |
16 |
aaatagtcattaacacaattctcaaaaccgaatcacaactkttgacatggtgagaagaacgtgttatgtctggaagtaggtcacttttgaaatgtataaa |
115 |
Q |
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| T |
2694667 |
aaatagtcattaacacaattttcaaaaccgaatcacaaattttgacatggtgaaaacaaccaattatgcctcgaagtaggttacttttg-aatgtataaa |
2694765 |
T |
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| Q |
116 |
tttcttttcagtcaagttgtctagtggctaaatttttgccccttgaagtgaataagtaaaaaattgggagctcaa |
190 |
Q |
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| T |
2694766 |
tatttttttagtcaagttgcctactgcctaaaacttttccctttgaagtgaataagtcgaaaattaggagctcaa |
2694840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 2696115 - 2696174
Alignment:
| Q |
11 |
gttcaaaatagtcattaacacaattctcaaaaccgaatcacaactkttgacatggtgagaa |
71 |
Q |
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| T |
2696115 |
gttccaaataatcactaactcaattttcaaaatcgaatcacaact-ttgacatggtgagaa |
2696174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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