View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5825-32 (Length: 116)

Name: Solexa-NF5825-32
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5825-32
Solexa-NF5825-32
[»] chr3 (7 HSPs)
chr3 (7-116)||(21584821-21584930)
chr3 (20-116)||(24497483-24497579)
chr3 (25-116)||(24923684-24923775)
chr3 (20-116)||(25084900-25084996)
chr3 (20-116)||(24920110-24920206)
chr3 (32-116)||(24981920-24982004)
chr3 (28-108)||(31825789-31825869)
[»] chr8 (1 HSPs)
chr8 (32-93)||(14261279-14261340)
[»] chr7 (2 HSPs)
chr7 (35-105)||(39955080-39955150)
chr7 (35-116)||(10575264-10575345)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 3e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 21584930 - 21584821
Alignment:
Q  7 ttttctttgtttatcaaattttctcttgaaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttctc 106  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||     
T  21584930 ttttctctgtttctcaaattttctcttgaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttctt 21584831  T
Q  107 cgtgataaca 116  Q
    ||||||||||    
T  21584830 cgtgataaca 21584821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 24497579 - 24497483
Alignment:
Q  20 tcaaattttctcttgaaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttctccgtgataaca 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| ||||    
T  24497579 tcaaattttctcttgaaaatgtcagggcgtggaaagggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaaca 24497483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 24923775 - 24923684
Alignment:
Q  25 ttttctcttgaaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttctccgtgataaca 116  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||    
T  24923775 ttttctcttgaaaatgtcaggtcgtggtaagggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataaca 24923684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 25084900 - 25084996
Alignment:
Q  20 tcaaattttctcttgaaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttctccgtgataaca 116  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||| ||||||||||    
T  25084900 tcaaattttctcgcgaaaatgtcaggtcgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataaca 25084996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 24920206 - 24920110
Alignment:
Q  20 tcaaattttctcttgaaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttctccgtgataaca 116  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| || || || ||||| ||||||||||    
T  24920206 tcaaattttctcgcgaaaatgtctggccgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcataggaaagttcttcgtgataaca 24920110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 24981920 - 24982004
Alignment:
Q  32 ttgaaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttctccgtgataaca 116  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || || || ||||| ||||||||||    
T  24981920 ttgaaaatgtcagggcgtggaaaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgataaca 24982004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 31825869 - 31825789
Alignment:
Q  28 tctcttgaaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttctccg 108  Q
    |||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| || |||||||| ||||||||    
T  31825869 tctcttgaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccg 31825789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 14261340 - 14261279
Alignment:
Q  32 ttgaaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagaca 93  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  14261340 ttgaaaatgtcaggtcgtggaaagggaggtaagggattaggaaagggaggtgcaaagagaca 14261279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 39955150 - 39955080
Alignment:
Q  35 aaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttct 105  Q
    ||||||||||| |||||||| ||||| |||||| | ||||||||||| |||||||| ||||||||||||||    
T  39955150 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttct 39955080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 10575264 - 10575345
Alignment:
Q  35 aaaatgtcaggccgtggaaagggaggtaagggactcggaaagggaggtgcaaagagacacagaaaggttctccgtgataaca 116  Q
    |||||||| || ||||||||||||||||| ||| | |||||||| ||||||||||||||  | |||||||||||||| ||||    
T  10575264 aaaatgtctggtcgtggaaagggaggtaaaggattaggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaaca 10575345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University