View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5825-4 (Length: 185)

Name: Solexa-NF5825-4
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5825-4
Solexa-NF5825-4
[»] chr8 (1 HSPs)
chr8 (8-185)||(29156849-29157026)
[»] chr2 (4 HSPs)
chr2 (8-168)||(2595825-2595985)
chr2 (8-185)||(2581119-2581296)
chr2 (8-159)||(2576709-2576860)
chr2 (8-157)||(2588761-2588910)
[»] chr6 (1 HSPs)
chr6 (9-168)||(30398942-30399101)
[»] chr3 (2 HSPs)
chr3 (8-108)||(21642774-21642874)
chr3 (8-108)||(21621104-21621204)
[»] chr7 (4 HSPs)
chr7 (45-136)||(36260106-36260197)
chr7 (57-156)||(46769204-46769303)
chr7 (57-141)||(36262901-36262985)
chr7 (61-141)||(36255214-36255294)
[»] chr4 (2 HSPs)
chr4 (44-141)||(19358985-19359082)
chr4 (74-141)||(19361289-19361356)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 29157026 - 29156849
Alignment:
Q  8 aaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgt 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29157026 aaaaacacaaggaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggagacatcaactgtgtgtatgactctgt 29156927  T
Q  108 ttccacatcaagtgaaacaatgacaaattccttagcctcaatatcctcccaaacatcaacatcaacactaacgggacg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29156926 ttccacatcaagtgaaacaatgacaaattccttagcctcaatatcctcccaaacatcaacatcaacactaacgggacg 29156849  T

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Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 2595985 - 2595825
Alignment:
Q  8 aaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgt 107  Q
    |||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||| ||    
T  2595985 aaaaacacaaggagtctttcaatatacataaagatggcggcttaatagatgacatttcatcaaaaccagagggaggcatcaactgcgtgtacgactccgt 2595886  T
Q  108 ttccacatcaagtgaaacaatgacaaattccttagcctcaatatcctcccaaacatcaaca 168  Q
    | ||| || ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  2595885 tcccatataaagtgaaacaatgacaaattccttagccttaatattctcccaaccatcaaca 2595825  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 2581296 - 2581119
Alignment:
Q  8 aaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgt 107  Q
    |||||||||| || || |||||||||||||| ||||| ||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||| | |||    
T  2581296 aaaaacacaaggagtccttcaatatacataatgatggcggcttaacagatgacatttcatcaaaaccacatggaggcatcaactgcgtgtatgattttgt 2581197  T
Q  108 ttccacatcaagtgaaacaatgacaaattccttagcctcaatatcctcccaaacatcaacatcaacactaacgggacg 185  Q
      ||| ||||||||||||||  |||||||| ||||||| ||||| ||||||| ||||||||||| ||||||| |||||    
T  2581196 ccccagatcaagtgaaacaacaacaaattcattagccttaatattctcccaaccatcaacatcatcactaacaggacg 2581119  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 2576860 - 2576709
Alignment:
Q  8 aaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgt 107  Q
    |||||||||| || || || |||||||||| |||||| ||||||| ||||||| ||||||||||| || |||||||||||||||||||||  |||| |||    
T  2576860 aaaaacacaaggagtccttgaatatacatacagatggcggcttaacagatgacgtttcatcaaaaccagagggaggcatcaactgtgtgtgcgactttgt 2576761  T
Q  108 ttccacatcaagtgaaacaatgacaaattccttagcctcaatatcctcccaa 159  Q
    | ||| ||||||||||||||||||||||||||||| || ||||| |||||||    
T  2576760 tcccatatcaagtgaaacaatgacaaattccttagacttaatattctcccaa 2576709  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 2588910 - 2588761
Alignment:
Q  8 aaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgt 107  Q
    |||||||||| || ||||||||||||||||||||||  ||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  2588910 aaaaacacaaggagtctttcaatatacataaagatgccggcttaacatatgacatttcatcaaaaccacagggaggcatcaactgcgtgtatgattctgt 2588811  T
Q  108 ttccacatcaagtgaaacaatgacaaattccttagcctcaatatcctccc 157  Q
      ||  ||||||||||||||  |||||||| |||| || ||||| |||||    
T  2588810 gccctgatcaagtgaaacaacaacaaattcattaggcttaatattctccc 2588761  T

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Target: chr6 (Bit Score: 88; Significance: 1e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 30399101 - 30398942
Alignment:
Q  9 aaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgtt 108  Q
    ||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||||||| || ||||||||||||  ||  ||||  ||||||||    
T  30399101 aaaacacaaggagtctttcaatatacataaagatggcagcttaatagatgacatttcatcaaaaccagagggaggcatcatttgcatgtacaactctgtt 30399002  T
Q  109 tccacatcaagtgaaacaatgacaaattccttagcctcaatatcctcccaaacatcaaca 168  Q
     ||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||    
T  30399001 cccatatcaagtgaaacaatgacaaattccttagccttaatattctcccaaccataaaca 30398942  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 21642774 - 21642874
Alignment:
Q  8 aaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgt 107  Q
    |||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||| ||| || |||||||||||||||| |||||  |||||||    
T  21642774 aaaaacacaaggagtctttcaatatacataaagatggcagcttaatagatgacatttcatccaaaccaaagggaggcatcaactgcgtgtacaactctgt 21642873  T
Q  108 t 108  Q
    |    
T  21642874 t 21642874  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 21621104 - 21621204
Alignment:
Q  8 aaaaacacaacgaatctttcaatatacataaagatggtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgt 107  Q
    ||||||| || || |||||||||||||||||| ||||  |||||||||||||||||||||||||| || |||||||||||||||| |||||  |||||||    
T  21621104 aaaaacagaaggagtctttcaatatacataaatatggcagcttaatagatgacatttcatcaaaaccagagggaggcatcaactgcgtgtacaactctgt 21621203  T
Q  108 t 108  Q
    |    
T  21621204 t 21621204  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 36260197 - 36260106
Alignment:
Q  45 tggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgtttccacatcaagtgaaacaatgacaaatt 136  Q
    ||||| ||||| |||||||||||||||| | || ||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||    
T  36260197 tggctcaataggtgacatttcatcaaaaccgcaaggaggcatcaactttgtgtatgtctctgtttccagatcaagtgaaacaatcacaaatt 36260106  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 46769303 - 46769204
Alignment:
Q  57 tgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgtttccacatcaagtgaaacaatgacaaattccttagcctcaatatcctcc 156  Q
    |||||||||||||||| |||  |||||||||||| | ||| |||| | |||||||  || ||||||||||||  ||||||||||||||| ||||| ||||    
T  46769303 tgacatttcatcaaaaccacgaggaggcatcaaccgcgtgaatgattttgtttccgtataaagtgaaacaatcgcaaattccttagccttaatattctcc 46769204  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 36262985 - 36262901
Alignment:
Q  57 tgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgtttccacatcaagtgaaacaatgacaaattcctta 141  Q
    |||||||||||||||| |||| ||||||||   ||||||||||| ||||||| | | ||||| ||||||||| ||||| ||||||    
T  36262985 tgacatttcatcaaaaccacacggaggcattggctgtgtgtatgtctctgttcctagatcaaatgaaacaatcacaaagtcctta 36262901  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 36255294 - 36255214
Alignment:
Q  61 atttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgtttccacatcaagtgaaacaatgacaaattcctta 141  Q
    |||||||||||| |||  |||||||||| ||| ||||||| ||||||| ||| |||||| | |||||| ||||| ||||||    
T  36255294 atttcatcaaaaccacgcggaggcatcagctgcgtgtatgtctctgttcccagatcaagcgcaacaatcacaaagtcctta 36255214  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 19359082 - 19358985
Alignment:
Q  44 gtggcttaatagatgacatttcatcaaaagcacagggaggcatcaactgtgtgtatgactctgtttccacatcaagtgaaacaatgacaaattcctta 141  Q
    |||||||||||  |||||| |||| |||| |||| ||||||||||||| |||||||| || |||| ||  ||||||||||||||| ||||||| ||||    
T  19359082 gtggcttaataagtgacatgtcataaaaaccacaaggaggcatcaactttgtgtatgtctttgttccctaatcaagtgaaacaatcacaaatttctta 19358985  T

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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 19361356 - 19361289
Alignment:
Q  74 cacagggaggcatcaactgtgtgtatgactctgtttccacatcaagtgaaacaatgacaaattcctta 141  Q
    |||| ||||||||||| |||| | |||  | |||| ||| ||||||||||||||| ||||||||||||    
T  19361356 cacacggaggcatcaaatgtgagcatgtatatgttcccagatcaagtgaaacaatcacaaattcctta 19361289  T

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