View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5825-8 (Length: 148)
Name: Solexa-NF5825-8
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5825-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 4e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 4e-76
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 38243203 - 38243350
Alignment:
| Q |
1 |
gactgttggaccaaagatcagaaggtcctagatttcaagctcggtattttggattttaatcaaaataatcaatattcgtatattttgtgaactgactggt |
100 |
Q |
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| T |
38243203 |
gactgttggaccaaagatcagaaggtcctagatttcaagctcggtattttggattttaatcaaaataatcaatattcgtatattttgtgaactgactggt |
38243302 |
T |
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| Q |
101 |
cttgatccaacattcattgatgcattgactgcgtgtttcttgatgaat |
148 |
Q |
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| T |
38243303 |
cttgatccaacattcattgatgcattgactgtgtgtttcttgatgaat |
38243350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 38220363 - 38220502
Alignment:
| Q |
14 |
aagatcagaaggtcctagatttcaagctcggtattttggattttaatcaaaataa------tcaatattcgtatattttgtgaactgactggtcttgatc |
107 |
Q |
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| T |
38220363 |
aagatcggacggtcctagatttcaatctaggtattttggattttaataaaaaaaaaaaaaatcaaaatttgtatattttgtgaactgactgatcttgatc |
38220462 |
T |
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| Q |
108 |
caacattcattgatgcattgactgcgtgtttcttgatgaat |
148 |
Q |
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| T |
38220463 |
taacatttattg-tgcatcgactgcgtgtttcttgatgaat |
38220502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 17454949 - 17455052
Alignment:
| Q |
28 |
ctagatttcaagctcggtattttggattttaatcaaaataatcaatattcgtatattttgtgaactgactggtcttgatccaacattcattgatgcattg |
127 |
Q |
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| T |
17454949 |
ctagattccaaactcggtattttggatttaaa----aacaatcaaaatttgtatattttgtgaactttccggttttgatccaacaatcactgatccattc |
17455044 |
T |
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| Q |
128 |
actgcgtg |
135 |
Q |
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| T |
17455045 |
agtgcgtg |
17455052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 10558684 - 10558715
Alignment:
| Q |
28 |
ctagatttcaagctcggtattttggattttaa |
59 |
Q |
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| T |
10558684 |
ctagatttcaagctcggtattttagattttaa |
10558715 |
T |
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