View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5826-1 (Length: 225)
Name: Solexa-NF5826-1
Description: NF5826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5826-1 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 27725448 - 27725338
Alignment:
| Q |
8 |
aaaggaagactcacctcaatccatagaatccacgagaccaaaaagtgaaacaatcttacactctttctctccattgccattactttacgccgctgctctc |
107 |
Q |
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| T |
27725448 |
aaaggaagactcacctcaatccatagaatccacgagaccaaaaagtgaaacaatcttacactctttctctccattgccattactttacgccgctgctctc |
27725349 |
T |
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| Q |
108 |
ttacccggagg |
118 |
Q |
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||||||||||| |
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| T |
27725348 |
ttacccggagg |
27725338 |
T |
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Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 27725322 - 27725241
Alignment:
| Q |
144 |
tttacaattcaatccttaattctaattcatttcaaaactgaattaaactaaactaaactaaactaaacagacggagctgtga |
225 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27725322 |
tttacaattcaatcctgaattctaattcatttcaaaactcaattaaactaaactaaactaaactaaacagacggagctgtga |
27725241 |
T |
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