View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5826-10 (Length: 54)
Name: Solexa-NF5826-10
Description: NF5826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5826-10 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 54; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-23
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34560788 - 34560841
Alignment:
| Q |
1 |
ctaaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcacac |
54 |
Q |
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| T |
34560788 |
ctaaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcacac |
34560841 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 18395438 - 18395386
Alignment:
| Q |
2 |
taaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcacac |
54 |
Q |
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| T |
18395438 |
taaaagttgagtgagacttaaaacctcaatcactgacattgtctccttcacac |
18395386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 18320336 - 18320387
Alignment:
| Q |
2 |
taaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcaca |
53 |
Q |
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|||||| |||||||||||||||| || |||||||||||||||||| ||||| |
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| T |
18320336 |
taaaaggtgagtgagacttaaaatgtcgatcactgacactgtctccttcaca |
18320387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 18398347 - 18398296
Alignment:
| Q |
2 |
taaaagttgagtgagacttaaaacctcaatcactgacactgtctccctcaca |
53 |
Q |
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|||||| |||||||||||||||| || |||||||||||||||||| ||||| |
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| T |
18398347 |
taaaaggtgagtgagacttaaaatgtcgatcactgacactgtctccttcaca |
18398296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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