View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5826-2 (Length: 195)
Name: Solexa-NF5826-2
Description: NF5826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5826-2 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 35655286 - 35655466
Alignment:
| Q |
7 |
acgtgtctcacttttctttctatgatgttattttataagaaccattaaaatcataccaccaagtgatatataagaaggaagagagtggtttttatcgctc |
106 |
Q |
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| T |
35655286 |
acgtgtctcacttttctttctatgatgttattttataagaaccattaaaatcataccaccaagtgatatataagaaggaagagagtggtttttatcgctc |
35655385 |
T |
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| Q |
107 |
aacagaaaccaaaggttaagccatgtccacctttctatacagttctctttcacaggaaatcttctcttcattccctttgct |
187 |
Q |
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| T |
35655386 |
aacagaaaccaaaggttaagccatgtccacctttctacacagttctctttcacaggaaatcttctcttcattccctatgct |
35655466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 35645894 - 35646031
Alignment:
| Q |
43 |
aagaaccattaaaatcataccaccaagtgatatataagaaggaagagagtggtttttatcgctcaacagaaaccaaaggttaagccatgtccacctttct |
142 |
Q |
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| T |
35645894 |
aagaaccaataaaatcatagcaccaagtgatatataagaaggaagagagtggtttttatcactcaacaaaaaccaaagcttaagccatgtccaccattct |
35645993 |
T |
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| Q |
143 |
atacagttctctttcacaggaaatcttctcttcattcc |
180 |
Q |
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| T |
35645994 |
gccaagttctctttcacatgaaatcttctcttcattcc |
35646031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 35676451 - 35676534
Alignment:
| Q |
104 |
ctcaacagaaaccaaaggttaagccatgtccacctttctatacagttctctttcacaggaaatcttctcttcattccctttgct |
187 |
Q |
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| T |
35676451 |
ctcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
35676534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 35672913 - 35672993
Alignment:
| Q |
81 |
aaggaagagagtggtttttatcgctcaacagaaacc----aaaggttaagccatgtccacctttctatacagttctctttc |
157 |
Q |
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| T |
35672913 |
aaggaagagagtggtttttgttgctcaacagaaaccaaccaaaggttaagccatgtccacctttctacaaaattctctttc |
35672993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 4173 - 4273
Alignment:
| Q |
88 |
agagtggtttttatcgctcaacagaaacc-aaaggttaagccatgtccacctttctatacagttctctttcacaggaaatcttctcttcattccctttgc |
186 |
Q |
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| T |
4173 |
agagtggtttttatcattaaacagaaaattaaagcttaagccatgtccacctttctacaatgttctctttcgcatgaaagcttctattcattccctatgc |
4272 |
T |
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| Q |
187 |
t |
187 |
Q |
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| T |
4273 |
t |
4273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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