View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5826-3 (Length: 151)
Name: Solexa-NF5826-3
Description: NF5826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5826-3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 33115302 - 33115165
Alignment:
| Q |
14 |
agggtagccataacagttttgggatctttcccaaaagagagaccagaagcaagtgaagctatgaccataagcataagggtcattccataaactcgttttc |
113 |
Q |
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| T |
33115302 |
agggtagccataacagttttgggatctttcccaaaagagagaccagaagcaagtgaagctatgaccataagcataagggtcattccataaactcgttttc |
33115203 |
T |
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| Q |
114 |
ttcccattttgtcaccaagccaaccaaagaaaagttgt |
151 |
Q |
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| T |
33115202 |
ttcccattttgtcaccaagccaaccaaagaaaagttgt |
33115165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 33109204 - 33109131
Alignment:
| Q |
77 |
accataagcataagggtcattccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaagttg |
150 |
Q |
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| T |
33109204 |
accataagcataagggttataccataaacttttttccttcctaatttgtcaccaagccaaccgaagaaaagttg |
33109131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 16175290 - 16175325
Alignment:
| Q |
109 |
ttttcttcccattttgtcaccaagccaaccaaagaa |
144 |
Q |
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| T |
16175290 |
ttttcttcccattttgtccccaagccaaccaaagaa |
16175325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 37315994 - 37316046
Alignment:
| Q |
98 |
ccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaagttg |
150 |
Q |
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| T |
37315994 |
ccataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttg |
37316046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 38884142 - 38884039
Alignment:
| Q |
47 |
aaagagagaccagaagcaagtgaagctatgaccataagcataagggtcattccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaa |
146 |
Q |
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| T |
38884142 |
aaagaaagaccagaaccaattgaacagataaccatcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaa |
38884043 |
T |
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| Q |
147 |
gttg |
150 |
Q |
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|||| |
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| T |
38884042 |
gttg |
38884039 |
T |
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