View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5826-7 (Length: 100)
Name: Solexa-NF5826-7
Description: NF5826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5826-7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 6334465 - 6334557
Alignment:
| Q |
8 |
ctcttcgtttaaatccctctcaatttcttccatttggagagatgcttacacgaataaatttaaaaaacataaataattaagggttgtgagatc |
100 |
Q |
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| T |
6334465 |
ctcttcgttaaagtccctctcaatttcttccatttagagagatgcttacacgaataaatttaaaaaacataaataattaagggttgtgagatc |
6334557 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 6326985 - 6327047
Alignment:
| Q |
36 |
tccatttggagagatgcttacacgaataaatttaaaaaacataaataattaagggttgtgaga |
98 |
Q |
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| T |
6326985 |
tccattttgagagatgcatacacgaataaatttaaaaaacataaataattaagggttctgaga |
6327047 |
T |
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