View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5827-1 (Length: 216)
Name: Solexa-NF5827-1
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5827-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 54479409 - 54479623
Alignment:
| Q |
1 |
agaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatca |
100 |
Q |
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| T |
54479409 |
agaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatca |
54479508 |
T |
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| Q |
101 |
tgaatcaggtgccaagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatcatcccagaccctttgatactggaccctttgatta |
200 |
Q |
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| T |
54479509 |
tgaatcaggtgccaagaatagagttctttatttaacttatcttggactc-tgcaaacaacttgatcatcccagaccctttgatactggaccctttgatta |
54479607 |
T |
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| Q |
201 |
tgatgcttgatcactg |
216 |
Q |
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| T |
54479608 |
tgatgcttgatcactg |
54479623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 25044465 - 25044311
Alignment:
| Q |
11 |
tatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggt |
110 |
Q |
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| T |
25044465 |
tatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggt |
25044366 |
T |
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| Q |
111 |
gccaagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatc |
166 |
Q |
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| T |
25044365 |
gccaaaaatagggttctttatttaacttatcttgaact-atgcaaacaacttgatc |
25044311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 25040630 - 25040598
Alignment:
| Q |
108 |
ggtgccaagaatagagttctttatttaacttat |
140 |
Q |
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| T |
25040630 |
ggtgccaagaatagagttctttatttgacttat |
25040598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 10124244 - 10124187
Alignment:
| Q |
108 |
ggtgccaagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatc |
166 |
Q |
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| T |
10124244 |
ggtgccaagaatagggttctttatttaacttatcttgaact-ttgcaaacaacttgatc |
10124187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 28649836 - 28649786
Alignment:
| Q |
117 |
aatagagttctttatttaacttatcttggactcttgcaaacaacttgatcat |
168 |
Q |
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| T |
28649836 |
aatagagttctttatttaacttatcttgaact-atgcaaataacttgatcat |
28649786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 21393115 - 21393244
Alignment:
| Q |
11 |
tatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggt |
110 |
Q |
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| T |
21393115 |
tatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacaatcatcatcgaaccggt |
21393214 |
T |
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| Q |
111 |
gccaagaatagagttctttatttaacttat |
140 |
Q |
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| T |
21393215 |
gccaagaatagagttctttatttgacttat |
21393244 |
T |
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