View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5827-16 (Length: 124)

Name: Solexa-NF5827-16
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5827-16
Solexa-NF5827-16
[»] chr8 (18 HSPs)
chr8 (49-102)||(17095630-17095683)
chr8 (49-98)||(11404081-11404130)
chr8 (50-99)||(11909425-11909474)
chr8 (49-98)||(29767266-29767315)
chr8 (49-98)||(32296642-32296691)
chr8 (48-97)||(43288151-43288200)
chr8 (52-98)||(4840223-4840269)
chr8 (56-98)||(19723398-19723440)
chr8 (49-98)||(22711589-22711638)
chr8 (50-98)||(41553366-41553414)
chr8 (51-98)||(27879563-27879610)
chr8 (51-98)||(28019744-28019791)
chr8 (49-99)||(28739563-28739613)
chr8 (49-98)||(36261726-36261775)
chr8 (49-81)||(21355004-21355036)
chr8 (49-98)||(11610360-11610409)
chr8 (49-98)||(30682919-30682967)
chr8 (54-97)||(44741924-44741967)
[»] chr6 (5 HSPs)
chr6 (49-110)||(15070205-15070266)
chr6 (49-98)||(20685405-20685454)
chr6 (49-98)||(35163753-35163802)
chr6 (49-98)||(17948760-17948809)
chr6 (50-92)||(14505533-14505575)
[»] chr4 (16 HSPs)
chr4 (49-109)||(51066573-51066632)
chr4 (48-98)||(2570280-2570330)
chr4 (49-99)||(46494400-46494450)
chr4 (49-98)||(7173588-7173637)
chr4 (49-98)||(36192621-36192670)
chr4 (49-104)||(2294713-2294768)
chr4 (55-98)||(55231773-55231816)
chr4 (51-97)||(32139246-32139292)
chr4 (49-98)||(22304094-22304143)
chr4 (49-98)||(29576495-29576544)
chr4 (49-98)||(51713968-51714017)
chr4 (50-98)||(30970387-30970435)
chr4 (55-99)||(51066240-51066284)
chr4 (48-98)||(50905827-50905877)
chr4 (50-98)||(47626996-47627044)
chr4 (48-99)||(23084467-23084518)
[»] chr1 (16 HSPs)
chr1 (49-101)||(30054442-30054494)
chr1 (49-101)||(21090195-21090247)
chr1 (49-98)||(12025261-12025310)
chr1 (49-98)||(22024183-22024232)
chr1 (49-98)||(30370063-30370112)
chr1 (49-98)||(45324086-45324135)
chr1 (51-98)||(20014540-20014587)
chr1 (52-98)||(14498082-14498128)
chr1 (49-98)||(17015200-17015249)
chr1 (49-98)||(30850843-30850892)
chr1 (49-92)||(35371754-35371797)
chr1 (49-99)||(35618055-35618105)
chr1 (49-98)||(33762543-33762592)
chr1 (50-101)||(44438550-44438601)
chr1 (49-98)||(33763257-33763306)
chr1 (50-98)||(4573460-4573508)
[»] chr7 (15 HSPs)
chr7 (48-98)||(21577101-21577151)
chr7 (49-99)||(38405156-38405206)
chr7 (49-98)||(245267-245316)
chr7 (49-98)||(35109771-35109820)
chr7 (49-98)||(37095213-37095262)
chr7 (49-98)||(38265240-38265289)
chr7 (49-97)||(41151253-41151301)
chr7 (49-100)||(16059354-16059405)
chr7 (50-100)||(18116945-18116995)
chr7 (49-98)||(34721914-34721963)
chr7 (49-98)||(45278532-45278581)
chr7 (50-97)||(12472202-12472249)
chr7 (65-101)||(48176496-48176532)
chr7 (50-97)||(24123070-24123117)
chr7 (59-98)||(39234853-39234892)
[»] chr3 (18 HSPs)
chr3 (48-98)||(37330610-37330660)
chr3 (49-98)||(8400935-8400984)
chr3 (49-98)||(50823778-50823827)
chr3 (49-98)||(50852033-50852082)
chr3 (49-98)||(52545401-52545450)
chr3 (49-100)||(55468080-55468131)
chr3 (49-99)||(34824636-34824686)
chr3 (49-99)||(43334056-43334106)
chr3 (49-98)||(7417878-7417927)
chr3 (49-98)||(35198845-35198894)
chr3 (48-98)||(19872486-19872536)
chr3 (52-98)||(22855970-22856016)
chr3 (48-98)||(25910669-25910719)
chr3 (49-98)||(30534905-30534954)
chr3 (49-98)||(22371732-22371781)
chr3 (49-98)||(37454747-37454796)
chr3 (58-95)||(773666-773703)
chr3 (51-96)||(31297529-31297574)
[»] chr5 (7 HSPs)
chr5 (49-98)||(17064403-17064452)
chr5 (49-99)||(20983005-20983055)
chr5 (49-98)||(37976630-37976679)
chr5 (52-96)||(31673912-31673956)
chr5 (54-97)||(39162859-39162902)
chr5 (49-98)||(41910904-41910953)
chr5 (58-98)||(35237062-35237102)
[»] chr2 (21 HSPs)
chr2 (49-98)||(45136973-45137022)
chr2 (50-98)||(2754054-2754102)
chr2 (52-98)||(2098829-2098875)
chr2 (49-98)||(10745235-10745284)
chr2 (49-98)||(17136467-17136516)
chr2 (50-98)||(2357079-2357127)
chr2 (50-98)||(26690235-26690283)
chr2 (49-92)||(6672802-6672845)
chr2 (48-98)||(44650472-44650522)
chr2 (49-98)||(36380135-36380184)
chr2 (49-98)||(36836332-36836381)
chr2 (51-98)||(558442-558489)
chr2 (48-98)||(25987664-25987715)
chr2 (56-98)||(13047159-13047201)
chr2 (52-98)||(21637980-21638026)
chr2 (49-98)||(40156120-40156169)
chr2 (51-98)||(33066672-33066719)
chr2 (49-98)||(5039500-5039549)
chr2 (49-86)||(21487228-21487265)
chr2 (49-98)||(30372683-30372732)
chr2 (48-99)||(4553560-4553611)
[»] scaffold0021 (1 HSPs)
scaffold0021 (49-92)||(107700-107743)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 5e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 17095630 - 17095683
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaaat 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
17095630 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaaaaat 17095683  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 11404081 - 11404130
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
11404081 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 11404130  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 11909474 - 11909425
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
11909474 cgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaaa 11909425  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 29767266 - 29767315
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
29767266 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 29767315  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 32296691 - 32296642
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||    
32296691 ccgaaggtcttccctgccttggattggggcaccatcccctcaccctaaaa 32296642  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 43288151 - 43288200
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaa 97  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||    
43288151 tccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaa 43288200  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 4840223 - 4840269
Alignment:
52 aaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
4840223 aaggtcttccctgccttggactagggcaccatcccctcaccctaaaa 4840269  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 19723398 - 19723440
Alignment:
56 tcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
19723398 tcttccctgccttggactggggcaccatcccctcaccctaaaa 19723440  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 22711589 - 22711638
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||||||    
22711589 ccgaaggtcttccttgccttggactggggcaccatcccctcatcctaaaa 22711638  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 41553366 - 41553414
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||| |||||| |||||||||| |||||||||||    
41553366 cgaaggtcttccctgccttagactggagcaccatcccctcaccctaaaa 41553414  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 27879610 - 27879563
Alignment:
51 gaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||| |||||||| |||||||||||||||||||||| |||||||||||    
27879610 gaagatcttccctaccttggactggggcaccatcccctcaccctaaaa 27879563  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 28019791 - 28019744
Alignment:
51 gaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||| |||||||| |||||||||||||||||||||| |||||||||||    
28019791 gaagatcttccctaccttggactggggcaccatcccctcaccctaaaa 28019744  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 28739613 - 28739563
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    ||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
28739613 ccgaaggtcttccctaccttggactgcagcaccatcccctcaccctaaaaa 28739563  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 36261726 - 36261775
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||| |||||||||||||| |||||||||||||||| ||||| |||||    
36261726 ccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaa 36261775  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 21355036 - 21355004
Alignment:
49 ccgaaggtcttccctgccttggactggggcacc 81  Q
    |||||||||||||||||||||||||||||||||    
21355036 ccgaaggtcttccctgccttggactggggcacc 21355004  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 11610360 - 11610409
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||| | |  ||||||||||||||||||||| |||||||||||    
11610360 ccgaaggtcttacttatcttggactggggcaccatcccctcaccctaaaa 11610409  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 30682919 - 30682967
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||| |||||||||||||||||| |||||||||||| ||||| |||||    
30682919 ccgaagatcttccctgccttggact-gggcaccatcccctcaccttaaaa 30682967  T

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Target: chr8; HSP #18
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 44741967 - 44741924
Alignment:
54 ggtcttccctgccttggactggggcaccatcccatcaccctaaa 97  Q
    |||||| |||||||||||||||||  ||||||| ||||||||||    
44741967 ggtcttacctgccttggactggggtgccatcccctcaccctaaa 44741924  T

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Target: chr6 (Bit Score: 50; Significance: 5e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 15070205 - 15070266
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaaatttgtaacc 110  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||    
15070205 ccgaaggtcttccctgccttagactggggcaccatcccctcacccaaaaaaaatttgtaacc 15070266  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 20685405 - 20685454
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
20685405 ccgaaggtcttccctgccttggactggggcaccatcccttcaccctaaaa 20685454  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 35163802 - 35163753
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
35163802 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 35163753  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 17948760 - 17948809
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||| |||||    
17948760 ccgaaggtcttccctgtcttggactgggacaccatcccctcaccttaaaa 17948809  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 14505575 - 14505533
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcacc 92  Q
    ||||| |||||| |||||||||||||||||||||||| |||||    
14505575 cgaagatcttccgtgccttggactggggcaccatcccctcacc 14505533  T

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Target: chr4 (Bit Score: 49; Significance: 2e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 51066573 - 51066632
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaaatttgtaac 109  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
51066573 ccgaaggtcttccctgccttggactggggcaccatcccctcaccct-aaaaaatttgtaac 51066632  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 2570280 - 2570330
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
2570280 tccgaagatcttccctgccttggactggggcaccatcccctcaccctaaaa 2570330  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 46494450 - 46494400
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||    
46494450 ccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaaa 46494400  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 7173637 - 7173588
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||    
7173637 ccgaaggtcttccctgcgttggactggggcaccatcccctcaccctaaaa 7173588  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 36192621 - 36192670
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||    
36192621 ccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaa 36192670  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 2294768 - 2294713
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaaattt 104  Q
    ||||| |||||| ||||||| ||||||||||||||||| |||||||||||||||||    
2294768 ccgaaagtcttcactgccttagactggggcaccatcccctcaccctaaaaaaattt 2294713  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 55231773 - 55231816
Alignment:
55 gtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
55231773 gtcttccctgccttggactggggcaccatcccctcaccctaaaa 55231816  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 32139246 - 32139292
Alignment:
51 gaaggtcttccctgccttggactggggcaccatcccatcaccctaaa 97  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
32139246 gaaggtcttctctgccttggactggggcaccatcccttcaccctaaa 32139292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 22304143 - 22304094
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||||    
22304143 ccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaa 22304094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 29576495 - 29576544
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||||||    
29576495 ccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaaa 29576544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 51714017 - 51713968
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||||    
51714017 ccgaaggtcttccctgctttgaactggggcaccatcccctcaccctaaaa 51713968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 30970435 - 30970387
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||| |||| ||||||||||||||||| |||||||||||    
30970435 cgaaggtcttccctaccttagactggggcaccatcccctcaccctaaaa 30970387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 51066240 - 51066284
Alignment:
55 gtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||    
51066240 gtcttccctgccttgaactggggcaccatcccctcaccctaaaaa 51066284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 50905827 - 50905877
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||| ||||||| |||||||||||||||  |||||||||||    
50905827 tccgaaggtcttccatgccttgaactggggcaccatcctttcaccctaaaa 50905877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 47627044 - 47626996
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||||  ||||||| | |||||||||||    
47627044 cgaaggtcttccctgccttggactggaacaccatctcctcaccctaaaa 47626996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 23084518 - 23084467
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    |||||||||||||||| ||||| ||||||| |||||| | ||||||||||||    
23084518 tccgaaggtcttccctaccttgaactggggtaccatctcctcaccctaaaaa 23084467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 30054494 - 30054442
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaaa 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
30054494 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaaaaa 30054442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 21090195 - 21090247
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaaa 101  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||    
21090195 ccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaaaaa 21090247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 12025261 - 12025310
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||    
12025261 ccgaaggtcttccctgccttggactggggcaccaccccctcaccctaaaa 12025310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 22024183 - 22024232
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||    
22024183 ccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaa 22024232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 30370112 - 30370063
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||    
30370112 ccgaaggtcttccctgccttggactggggcaccatcccctcaccttaaaa 30370063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 45324086 - 45324135
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||    
45324086 ccgaaggtcttccctgctttggactggggcaccatcccctcaccctaaaa 45324135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 20014540 - 20014587
Alignment:
51 gaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
20014540 gaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaa 20014587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 14498128 - 14498082
Alignment:
52 aaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||    
14498128 aaggtcttccctgccttggactggggcgccatcccctcaccctaaaa 14498082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 17015200 - 17015249
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||||    
17015200 ccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaa 17015249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 30850892 - 30850843
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||||||    
30850892 ccgaaggtctttcctgtcttggactggggcaccatcccctcaccctaaaa 30850843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 35371797 - 35371754
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcacc 92  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
35371797 ccgaagttcttccctgccttggactggggcaccatcccctcacc 35371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 35618055 - 35618105
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    ||||||||||||| ||| ||||||||||| |||||||| ||||||||||||    
35618055 ccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaaa 35618105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 33762592 - 33762543
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||| || |||||||||||||||||||||| |||||| |||||||||||    
33762592 ccgaaagttttccctgccttggactggggcatcatcccctcaccctaaaa 33762543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 44438601 - 44438550
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaaa 101  Q
    |||||||||||||||||||| ||||||| |||||||| || || ||||||||    
44438601 cgaaggtcttccctgccttgaactggggtaccatcccctcgccttaaaaaaa 44438550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 33763306 - 33763257
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||| || |||||||||||| ||||||||| |||||| |||||||||||    
33763306 ccgaaagttttccctgccttgaactggggcatcatcccctcaccctaaaa 33763257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 4573460 - 4573508
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||  |||||||| ||||| ||||| |||||||||||    
4573460 cgaaggtcttccctgttttggactgaggcactatcccctcaccctaaaa 4573508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 3e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 21577151 - 21577101
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
21577151 tccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 21577101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 38405206 - 38405156
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
38405206 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaaa 38405156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 245316 - 245267
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
245316 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 245267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 35109771 - 35109820
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
35109771 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 35109820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 37095262 - 37095213
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
37095262 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 37095213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 38265289 - 38265240
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
38265289 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 38265240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 41151253 - 41151301
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaa 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
41151253 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 41151301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 16059405 - 16059354
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaa 100  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||    
16059405 ccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaaaa 16059354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 18116995 - 18116945
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaa 100  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
18116995 cgaagatcttccctgccttggactggggcaccatcccctcaccctaaaaaa 18116945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 34721914 - 34721963
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||    
34721914 ccgaaggacttccctgccttggactcgggcaccatcccctcaccctaaaa 34721963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 45278532 - 45278581
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||||||    
45278532 ccgaatgtcttccctgccttggactggagcaccatcccctcaccctaaaa 45278581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 12472202 - 12472249
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaa 97  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||    
12472202 cgaaggtcttccctgtcttggactggggtaccatcccctcaccctaaa 12472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 48176496 - 48176532
Alignment:
65 ccttggactggggcaccatcccatcaccctaaaaaaa 101  Q
    |||||||||||||||||||||| ||||||||||||||    
48176496 ccttggactggggcaccatcccctcaccctaaaaaaa 48176532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 24123070 - 24123117
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaa 97  Q
    ||||||||||| |||||||||| |||| ||||||||  ||||||||||    
24123070 cgaaggtcttctctgccttggattgggtcaccatcctctcaccctaaa 24123117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 39234853 - 39234892
Alignment:
59 tccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||| ||||||||||||||||||| |||||| ||||    
39234853 tccctgccatggactggggcaccatcccctcacccaaaaa 39234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 3e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 37330660 - 37330610
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
37330660 tccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 37330610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 8400935 - 8400984
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
8400935 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 8400984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 50823778 - 50823827
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
50823778 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 50823827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 50852082 - 50852033
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
50852082 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 50852033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 52545401 - 52545450
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
52545401 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 52545450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 55468080 - 55468131
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaaa 100  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
55468080 ccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaaaa 55468131  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 34824636 - 34824686
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||    
34824636 ccgaaggtcttcccggccttggactggggcaccatcccctcaccctaaaaa 34824686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 43334106 - 43334056
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||    
43334106 ccgaaggtcttccctgccttggactggggtaccatcccctcaccctaaaaa 43334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 7417878 - 7417927
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||    
7417878 ccgaaggtcttcactgccttggactggggcaccatcccctcaccctaaaa 7417927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 35198845 - 35198894
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||    
35198845 ccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaaa 35198894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 19872536 - 19872486
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
19872536 tccgaaggtcttccctgtcttggactggggcaccatcccctcatcctaaaa 19872486  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 22855970 - 22856016
Alignment:
52 aaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||    
22855970 aaggtcttccctgccttggactggagcaccatcccctcaccctaaaa 22856016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 25910719 - 25910669
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||    
25910719 tccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaa 25910669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 30534954 - 30534905
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||||||    
30534954 ccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaa 30534905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 22371781 - 22371732
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||| |||||||||| || ||||||||||||||||| |||||||||||    
22371781 ccgaagatcttccctgctttagactggggcaccatcccctcaccctaaaa 22371732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 37454796 - 37454747
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||| |||| || |||||||||||||| |||||||||||    
37454796 ccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaa 37454747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 773666 - 773703
Alignment:
58 ttccctgccttggactggggcaccatcccatcacccta 95  Q
    |||||| |||||||||||||||||||||| ||||||||    
773666 ttcccttccttggactggggcaccatcccctcacccta 773703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 31297574 - 31297529
Alignment:
51 gaaggtcttccctgccttggactggggcaccatcccatcaccctaa 96  Q
    ||||||||||| ||||||||||||||| ||||| || |||||||||    
31297574 gaaggtcttccttgccttggactggggaaccatgccctcaccctaa 31297529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 17064403 - 17064452
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
17064403 ccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 17064452  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 20983055 - 20983005
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||    
20983055 ccgaaagtcttccctgccttggactggggcaccatcccctcaccctaaaaa 20983005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 37976630 - 37976679
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||| || ||||||||| |||||||||||||||| |||||||||||    
37976630 ccgaaggtttttcctgccttgaactggggcaccatcccctcaccctaaaa 37976679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 31673912 - 31673956
Alignment:
52 aaggtcttccctgccttggactggggcaccatcccatcaccctaa 96  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||    
31673912 aaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 39162902 - 39162859
Alignment:
54 ggtcttccctgccttggactggggcaccatcccatcaccctaaa 97  Q
    |||||||  ||||||||||||||||||| |||||||||||||||    
39162902 ggtcttctgtgccttggactggggcaccgtcccatcaccctaaa 39162859  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 41910904 - 41910953
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||| |||||| |||||||| |||||||||||||||| ||||| |||||    
41910904 ccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaa 41910953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 35237102 - 35237062
Alignment:
58 ttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
35237102 ttccctgccttggactgaggcaccatcccctcactctaaaa 35237062  T

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Target: chr2 (Bit Score: 46; Significance: 1e-17; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 45137022 - 45136973
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
45137022 ccgaaggtcttccctgccttggactggggcaccatcccttcaccctaaaa 45136973  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 2754102 - 2754054
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
2754102 cgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 2754054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 2098875 - 2098829
Alignment:
52 aaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 2098829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 10745284 - 10745235
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
10745284 ccgaaggtattccctgccttggactggggcaccatcccctcaccctaaaa 10745235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 17136467 - 17136516
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||    
17136467 ccgaaggtcttccccgccttggactggggcaccatcccctcaccctaaaa 17136516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 2357127 - 2357079
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||    
2357127 cgaaggtcttccatgccttggactggggcaccatcccctcaccctaaaa 2357079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 26690235 - 26690283
Alignment:
50 cgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||    
26690235 cgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaa 26690283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 6672845 - 6672802
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcacc 92  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
6672845 ccgaaggtcttccctgccttggactggggcaccatcccctcacc 6672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 44650472 - 44650522
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||||||||    
44650472 tccgaagatcttccctgccttggaccggggcaccatcccctcaccctaaaa 44650522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 36380184 - 36380135
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||||||    
36380184 ccgaaggtcttccctaccttggactgaggcaccatcccctcaccctaaaa 36380135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 36836381 - 36836332
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| |||||    
36836381 ccgaagatcttccctgccttggactggggcaccatcccctcaccttaaaa 36836332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 558489 - 558442
Alignment:
51 gaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||||    
558489 gaaggtcttcccttccttggaatggggcaccatcccctcaccctaaaa 558442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 25987715 - 25987664
Alignment:
48 tccgaaggtctt-ccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||||||    
25987715 tccgaaggtctttccctgccttggtctggggcaccatcccctcaccctaaaa 25987664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 13047201 - 13047159
Alignment:
56 tcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
13047201 tcttccctgccttggactggagcaccatcccctcaccctaaaa 13047159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 21637980 - 21638026
Alignment:
52 aaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||| |||||||||||| |||||||||||| |||||||||||    
21637980 aaggtcttctctgccttggactagggcaccatcccctcaccctaaaa 21638026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 40156120 - 40156169
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||| |||||    
40156120 ccgaaggtcttccctaccttgaactggggcaccatcccctcaccataaaa 40156169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 33066672 - 33066719
Alignment:
51 gaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||||||| || |||||||||||||||||||||| ||| |||||||    
33066672 gaaggtcttctctaccttggactggggcaccatcccctcatcctaaaa 33066719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 5039500 - 5039549
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    |||||| |||||||| ||||||||| |||||||||||| |||| ||||||    
5039500 ccgaagatcttccctaccttggactagggcaccatcccctcactctaaaa 5039549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 21487228 - 21487265
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatccc 86  Q
    ||||| |||||||||||||| |||||||||||||||||    
21487228 ccgaaagtcttccctgccttagactggggcaccatccc 21487265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 30372732 - 30372683
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaa 98  Q
    ||||||||||||| ||||||| ||||||| ||||| || |||||||||||    
30372732 ccgaaggtcttccatgccttgaactggggtaccataccctcaccctaaaa 30372683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 4553611 - 4553560
Alignment:
48 tccgaaggtcttccctgccttggactggggcaccatcccatcaccctaaaaa 99  Q
    |||| |||||||| ||| ||| ||||||||||||||||| |||| |||||||    
4553611 tccggaggtcttctctgtcttagactggggcaccatcccctcactctaaaaa 4553560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 107743 - 107700
Alignment:
49 ccgaaggtcttccctgccttggactggggcaccatcccatcacc 92  Q
    |||||||||| ||||||||||||||||||||||||||| |||||    
107743 ccgaaggtctaccctgccttggactggggcaccatcccctcacc 107700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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